Literature DB >> 17719219

Conserved lipid-binding sites in membrane proteins: a focus on cytochrome c oxidase.

Ling Qin1, Martyn A Sharpe, R Michael Garavito, Shelagh Ferguson-Miller.   

Abstract

Specific interactions between lipids and membrane proteins have been observed in recent high-resolution crystal structures of membrane proteins. A number of cytochrome oxidase structures were analyzed, along with many amino acid sequences of membrane-spanning regions aligned according to their location in the membrane. The results reveal conservation of lipid-binding sites and of the residues that form them. These studies imply that bound lipids have important roles that are crucial to the assembly, structure, or activity of the protein. Evidence for some of these roles in subunit interactions, membrane insertion, and protein-protein complex formation is reviewed.

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Year:  2007        PMID: 17719219      PMCID: PMC2395296          DOI: 10.1016/j.sbi.2007.07.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  26 in total

1.  A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus.

Authors:  Laura M Hunsicker-Wang; Ronald L Pacoma; Ying Chen; James A Fee; C David Stout
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-02-24

2.  Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae.

Authors:  Takeshi Murata; Ichiro Yamato; Yoshimi Kakinuma; Andrew G W Leslie; John E Walker
Journal:  Science       Date:  2005-03-31       Impact factor: 47.728

3.  Structure of bacteriorhodopsin at 1.55 A resolution.

Authors:  H Luecke; B Schobert; H T Richter; J P Cartailler; J K Lanyi
Journal:  J Mol Biol       Date:  1999-08-27       Impact factor: 5.469

4.  Suicide inactivation of cytochrome c oxidase: catalytic turnover in the absence of subunit III alters the active site.

Authors:  M R Bratton; M A Pressler; J P Hosler
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

Review 5.  Specific protein-lipid interactions in membrane proteins.

Authors:  C Hunte
Journal:  Biochem Soc Trans       Date:  2005-11       Impact factor: 5.407

6.  Structure at 2.7 A resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment.

Authors:  C Ostermeier; A Harrenga; U Ermler; H Michel
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

7.  Cardiolipin-depleted bovine heart cytochrome c oxidase: binding stoichiometry and affinity for cardiolipin derivatives.

Authors:  N C Robinson; J Zborowski; L H Talbert
Journal:  Biochemistry       Date:  1990-09-25       Impact factor: 3.162

8.  Cardiolipin is essential for organization of complexes III and IV into a supercomplex in intact yeast mitochondria.

Authors:  Mei Zhang; Eugenia Mileykovskaya; William Dowhan
Journal:  J Biol Chem       Date:  2005-06-22       Impact factor: 5.157

Review 9.  Lipids in membrane protein structures.

Authors:  Hildur Palsdottir; Carola Hunte
Journal:  Biochim Biophys Acta       Date:  2004-11-03

Review 10.  Structure, dynamics and composition of the lipid-protein interface. Perspectives from spin-labelling.

Authors:  D Marsh; L I Horváth
Journal:  Biochim Biophys Acta       Date:  1998-11-10
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  28 in total

1.  Time to face the fats: what can mass spectrometry reveal about the structure of lipids and their interactions with proteins?

Authors:  Simon H J Brown; Todd W Mitchell; Aaron J Oakley; Huong T Pham; Stephen J Blanksby
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

2.  Membrane protein stability can be compromised by detergent interactions with the extramembranous soluble domains.

Authors:  Zhengrong Yang; Chi Wang; Qingxian Zhou; Jianli An; Ellen Hildebrandt; Luba A Aleksandrov; John C Kappes; Lawrence J DeLucas; John R Riordan; Ina L Urbatsch; John F Hunt; Christie G Brouillette
Journal:  Protein Sci       Date:  2014-05-03       Impact factor: 6.725

3.  Mutagenic analysis of Cox11 of Rhodobacter sphaeroides: insights into the assembly of Cu(B) of cytochrome c oxidase.

Authors:  Audie K Thompson; Daniel Smith; Jimmy Gray; Heather S Carr; Aimin Liu; Dennis R Winge; Jonathan P Hosler
Journal:  Biochemistry       Date:  2010-07-13       Impact factor: 3.162

Review 4.  Membrane properties that shape the evolution of membrane enzymes.

Authors:  Charles R Sanders; James M Hutchison
Journal:  Curr Opin Struct Biol       Date:  2018-03-27       Impact factor: 6.809

5.  Cytochrome aa3 Oxygen Reductase Utilizes the Tunnel Observed in the Crystal Structures To Deliver O2 for Catalysis.

Authors:  Paween Mahinthichaichan; Robert B Gennis; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2018-03-29       Impact factor: 3.162

6.  Hydramacin-1 in action: scrutinizing the barnacle model.

Authors:  Matthias Michalek; Bruno Vincent; Rainer Podschun; Joachim Grötzinger; Burkhard Bechinger; Sascha Jung
Journal:  Antimicrob Agents Chemother       Date:  2013-04-15       Impact factor: 5.191

7.  Internal lipid architecture of the hetero-oligomeric cytochrome b6f complex.

Authors:  S Saif Hasan; William A Cramer
Journal:  Structure       Date:  2014-06-12       Impact factor: 5.006

8.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

9.  Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position.

Authors:  Hector Martinez-Seara; Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; Mikko Karttunen; Ramon Reigada
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

10.  A conserved amphipathic ligand binding region influences k-path-dependent activity of cytochrome C oxidase.

Authors:  Carrie Hiser; Leann Buhrow; Jian Liu; Leslie Kuhn; Shelagh Ferguson-Miller
Journal:  Biochemistry       Date:  2013-02-12       Impact factor: 3.162

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