Literature DB >> 15247494

Does extraction of DNA and RNA by magnetic fishing work for diverse plant species?

Jaana Vuosku1, Laura Jaakola, Soile Jokipii, Katja Karppinen, Terttu Kämäräinen, Veli-Pekka Pelkonen, Anne Jokela, Tytti Sarjala, Anja Hohtola, Hely Häggman.   

Abstract

An automated nucleic acid extraction procedure with magnetic particles originally designed for isolation of deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from animal tissues was tested for plant material. We isolated genomic DNA and total RNA from taxonomically diverse plant species representing conifers (Scots pine), broad-leaved trees (silver birch and hybrid aspen), dwarf shrubs (bilberry), and both monocotyledonous (regal lily) and dicotyledonous (Saint John's wort, round-leaved sundew, and tobacco) herbaceous plants. Buffers developed for DNA extraction were successfully used in addition to manufacturer's extraction kits. The quality of RNA was appropriate for many applications, but the quality of DNA was not always sufficient for polymerase chain reaction (PCR) amplification. However, we could strikingly improve the quality by eliminating the adherent compounds during the extraction or later in the PCR phase. Our results show that the use of the procedure could be extended to diverse plant species. This procedure is especially suitable for small sample sizes and for simultaneous processing of many samples enabling large-scale plant applications in population genetics, or in the screening of putative transgenic plants.

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Year:  2004        PMID: 15247494     DOI: 10.1385/MB:27:3:209

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  26 in total

1.  An efficient method for isolation of RNA and DNA from plants containing polyphenolics.

Authors:  M E John
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

2.  Genetic analysis of forest tree populations: isolation of DNA from spruce and fir apices.

Authors:  J Kreike
Journal:  Plant Mol Biol       Date:  1990-05       Impact factor: 4.076

3.  Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support.

Authors:  T Hultman; S Ståhl; E Hornes; M Uhlén
Journal:  Nucleic Acids Res       Date:  1989-07-11       Impact factor: 16.971

4.  The effects of plant polysaccharides and buffer additives on PCR.

Authors:  T Demeke; R P Adams
Journal:  Biotechniques       Date:  1992-03       Impact factor: 1.993

5.  Extraction of DNA using monoclonal anti-DNA and magnetic beads.

Authors:  A R Gelsthorpe; K Gelsthorpe; R J Sokol
Journal:  Biotechniques       Date:  1997-06       Impact factor: 1.993

6.  Rapid identification of transformed wheat using a half-seed PCR assay.

Authors:  Paul L McCarthy; Jennifer L Hansen; Robert S Zemetra; Phillip H Berger
Journal:  Biotechniques       Date:  2002-03       Impact factor: 1.993

7.  PCR amplification from single seeds, facilitating DNA marker-assisted breeding.

Authors:  G L Wang; R A Wing; A H Paterson
Journal:  Nucleic Acids Res       Date:  1993-05-25       Impact factor: 16.971

8.  Silver birch (Betula pendula) plants with aux and rol genes show consistent changes in morphology, xylem structure and chemistry.

Authors:  Riikka Piispanen; Tuija Aronen; Xiwen Chen; Pekka Saranpää; Hely Häggman
Journal:  Tree Physiol       Date:  2003-08       Impact factor: 4.196

9.  Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA.

Authors:  P K Koonjul; W F Brandt; J M Farrant; G G Lindsey
Journal:  Nucleic Acids Res       Date:  1999-02-01       Impact factor: 16.971

10.  The production of transgenic Scots pine (Pinus sylvestris L.) via the application of transformed pollen in controlled crossings.

Authors:  Tuija S Aronen; Teijo O Nikkanen; Hely M Häggman
Journal:  Transgenic Res       Date:  2003-06       Impact factor: 2.788

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  4 in total

1.  Consistency of polyamine profiles and expression of arginine decarboxylase in mitosis during zygotic embryogenesis of Scots pine.

Authors:  Jaana Vuosku; Anne Jokela; Esa Läärä; Mira Sääskilahti; Riina Muilu; Suvi Sutela; Teresa Altabella; Tytti Sarjala; Hely Häggman
Journal:  Plant Physiol       Date:  2006-09-08       Impact factor: 8.340

2.  Protocol: A high-throughput DNA extraction system suitable for conifers.

Authors:  Stanislav Bashalkhanov; Om P Rajora
Journal:  Plant Methods       Date:  2008-08-01       Impact factor: 4.993

3.  Integrated DNA and RNA extraction using magnetic beads from viral pathogens causing acute respiratory infections.

Authors:  Hui He; Rongqun Li; Yi Chen; Ping Pan; Wenjuan Tong; Xueyan Dong; Yueming Chen; Daojun Yu
Journal:  Sci Rep       Date:  2017-03-23       Impact factor: 4.379

4.  Endogenous PttHb1 and PttTrHb, and heterologous Vitreoscilla vhb haemoglobin gene expression in hybrid aspen roots with ectomycorrhizal interaction.

Authors:  Soile Jokipii; Hely Häggman; Günter Brader; Pauli T Kallio; Karoliina Niemi
Journal:  J Exp Bot       Date:  2008       Impact factor: 6.992

  4 in total

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