Literature DB >> 15695358

A systematic high-throughput screen of a yeast deletion collection for mutants defective in PHO5 regulation.

Sidong Huang1, Erin K O'Shea.   

Abstract

In response to phosphate limitation, Saccharomyces cerevisiae induces transcription of a set of genes important for survival. One of these genes is PHO5, which encodes a secreted acid phosphatase. A phosphate-responsive signal transduction pathway (the PHO pathway) mediates this response through three central components: a cyclin-dependent kinase (CDK), Pho85; a cyclin, Pho80; and a CDK inhibitor (CKI), Pho81. While signaling downstream of the Pho81/Pho80/Pho85 complex to PHO5 expression has been well characterized, little is known about factors acting upstream of these components. To identify missing factors involved in the PHO pathway, we carried out a high-throughput, quantitative enzymatic screen of a yeast deletion collection, searching for novel mutants defective in expression of PHO5. As a result of this study, we have identified at least nine genes that were previously not known to regulate PHO5 expression. The functional diversity of these genes suggests that the PHO pathway is networked with other important cellular signaling pathways. Among these genes, ADK1 and ADO1, encoding an adenylate kinase and an adenosine kinase, respectively, negatively regulate PHO5 expression and appear to function upstream of PHO81.

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Year:  2005        PMID: 15695358      PMCID: PMC1360160          DOI: 10.1534/genetics.104.038695

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  53 in total

1.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

2.  Structural analysis of the yeast SWI/SNF chromatin remodeling complex.

Authors:  Corey L Smith; Rachel Horowitz-Scherer; Joan F Flanagan; Christopher L Woodcock; Craig L Peterson
Journal:  Nat Struct Biol       Date:  2003-02

3.  Functional analysis of the yeast Glc7-binding protein Reg1 identifies a protein phosphatase type 1-binding motif as essential for repression of ADH2 expression.

Authors:  K M Dombek; V Voronkova; A Raney; E T Young
Journal:  Mol Cell Biol       Date:  1999-09       Impact factor: 4.272

4.  Regulation of chromatin remodeling by inositol polyphosphates.

Authors:  David J Steger; Elizabeth S Haswell; Aimee L Miller; Susan R Wente; Erin K O'Shea
Journal:  Science       Date:  2002-11-14       Impact factor: 47.728

5.  Inorganic phosphate is sensed by specific phosphate carriers and acts in concert with glucose as a nutrient signal for activation of the protein kinase A pathway in the yeast Saccharomyces cerevisiae.

Authors:  Frank Giots; Monica C V Donaton; Johan M Thevelein
Journal:  Mol Microbiol       Date:  2003-02       Impact factor: 3.501

6.  Multiple mechanistically distinct functions of SAGA at the PHO5 promoter.

Authors:  Slobodan Barbaric; Hans Reinke; Wolfram Hörz
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

7.  Polyphosphate loss promotes SNF/SWI- and Gcn5-dependent mitotic induction of PHO5.

Authors:  Daniel W Neef; Michael P Kladde
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

8.  Phosphate-regulated inactivation of the kinase PHO80-PHO85 by the CDK inhibitor PHO81.

Authors:  K R Schneider; R L Smith; E K O'Shea
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

9.  Arg82p is a bifunctional protein whose inositol polyphosphate kinase activity is essential for nitrogen and PHO gene expression but not for Mcm1p chaperoning in yeast.

Authors:  Mohamed El Alami; Francine Messenguy; Bart Scherens; Evelyne Dubois
Journal:  Mol Microbiol       Date:  2003-07       Impact factor: 3.501

Review 10.  The SWI-SNF complex: a chromatin remodeling machine?

Authors:  C L Peterson; J W Tamkun
Journal:  Trends Biochem Sci       Date:  1995-04       Impact factor: 13.807

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  34 in total

Review 1.  The histone chaperone Asf1 at the crossroads of chromatin and DNA checkpoint pathways.

Authors:  Florence Mousson; Françoise Ochsenbein; Carl Mann
Journal:  Chromosoma       Date:  2006-12-19       Impact factor: 4.316

2.  Nap1 links transcription elongation, chromatin assembly, and messenger RNP complex biogenesis.

Authors:  Brian C Del Rosario; Lucy F Pemberton
Journal:  Mol Cell Biol       Date:  2008-01-28       Impact factor: 4.272

3.  A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis.

Authors:  Ritu Gupta; Adhish S Walvekar; Shun Liang; Zeenat Rashida; Premal Shah; Sunil Laxman
Journal:  Elife       Date:  2019-07-01       Impact factor: 8.140

4.  Novel acid phosphatase in Candida glabrata suggests selective pressure and niche specialization in the phosphate signal transduction pathway.

Authors:  Brianne R Orkwis; Danielle L Davies; Christine L Kerwin; Dominique Sanglard; Dennis D Wykoff
Journal:  Genetics       Date:  2010-08-25       Impact factor: 4.562

5.  High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection.

Authors:  Sara J Cooper; Gregory L Finney; Shauna L Brown; Sven K Nelson; Jay Hesselberth; Michael J MacCoss; Stanley Fields
Journal:  Genome Res       Date:  2010-07-07       Impact factor: 9.043

6.  Genomic analysis of the Opi- phenotype.

Authors:  Leandria C Hancock; Ryan P Behta; John M Lopes
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

Review 7.  Life in the midst of scarcity: adaptations to nutrient availability in Saccharomyces cerevisiae.

Authors:  Bart Smets; Ruben Ghillebert; Pepijn De Snijder; Matteo Binda; Erwin Swinnen; Claudio De Virgilio; Joris Winderickx
Journal:  Curr Genet       Date:  2010-02       Impact factor: 3.886

8.  Fission yeast Iec1-ino80-mediated nucleosome eviction regulates nucleotide and phosphate metabolism.

Authors:  Cassandra Justine Hogan; Sofia Aligianni; Mickaël Durand-Dubief; Jenna Persson; William R Will; Judith Webster; Linda Wheeler; Christopher K Mathews; Sarah Elderkin; David Oxley; Karl Ekwall; Patrick Daniel Varga-Weisz
Journal:  Mol Cell Biol       Date:  2009-11-23       Impact factor: 4.272

9.  Pho91 Is a vacuolar phosphate transporter that regulates phosphate and polyphosphate metabolism in Saccharomyces cerevisiae.

Authors:  Hans Caspar Hürlimann; Martha Stadler-Waibel; Thomas P Werner; Florian M Freimoser
Journal:  Mol Biol Cell       Date:  2007-09-05       Impact factor: 4.138

10.  Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations.

Authors:  Viktor M Boer; Christopher A Crutchfield; Patrick H Bradley; David Botstein; Joshua D Rabinowitz
Journal:  Mol Biol Cell       Date:  2009-11-04       Impact factor: 4.138

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