Literature DB >> 15695330

RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells.

Ralf Kittler1, Laurence Pelletier, Chunling Ma, Ina Poser, Steffi Fischer, Anthony A Hyman, Frank Buchholz.   

Abstract

RNA interference (RNAi) is a widely used method for analysis of gene function in tissue culture cells. However, to date there has been no reliable method for testing the specificity of any particular RNAi experiment. The ideal experiment is to rescue the phenotype by expression of the target gene in a form refractory to RNAi. The transgene should be expressed at physiological levels and with its different splice variants. Here, we demonstrate that expression of murine bacterial artificial chromosomes in human cells provides a reliable method to create RNAi-resistant transgenes. This strategy should be applicable to all eukaryotes and should therefore be a standard technology for confirming the specificity of RNAi. We show that this technique can be extended to allow the creation of tagged transgenes, expressed at physiological levels, for the further study of gene function.

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Year:  2005        PMID: 15695330      PMCID: PMC548992          DOI: 10.1073/pnas.0409861102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

2.  Proteomic characterization of the human centrosome by protein correlation profiling.

Authors:  Jens S Andersen; Christopher J Wilkinson; Thibault Mayor; Peter Mortensen; Erich A Nigg; Matthias Mann
Journal:  Nature       Date:  2003-12-04       Impact factor: 49.962

3.  Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs).

Authors:  Stephan P Persengiev; Xiaochun Zhu; Michael R Green
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

Review 4.  Systematic genome-wide screens of gene function.

Authors:  Anne E Carpenter; David M Sabatini
Journal:  Nat Rev Genet       Date:  2004-01       Impact factor: 53.242

5.  Interferon induction by siRNAs and ssRNAs synthesized by phage polymerase.

Authors:  Dong-Ho Kim; Michael Longo; Young Han; Patric Lundberg; Edouard Cantin; John J Rossi
Journal:  Nat Biotechnol       Date:  2004-02-08       Impact factor: 54.908

6.  An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division.

Authors:  Ralf Kittler; Gabriele Putz; Laurence Pelletier; Ina Poser; Anne-Kristin Heninger; David Drechsel; Steffi Fischer; Irena Konstantinova; Bianca Habermann; Hannes Grabner; Marie-Laure Yaspo; Heinz Himmelbauer; Bernd Korn; Karla Neugebauer; Maria Teresa Pisabarro; Frank Buchholz
Journal:  Nature       Date:  2004-12-23       Impact factor: 49.962

7.  Induction of an interferon response by RNAi vectors in mammalian cells.

Authors:  Alan J Bridge; Stephanie Pebernard; Annick Ducraux; Anne-Laure Nicoulaz; Richard Iggo
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

8.  Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicing.

Authors:  Chi Zhang; Diane R Dowd; Ada Staal; Chun Gu; Jane B Lian; Andre J van Wijnen; Gary S Stein; Paul N MacDonald
Journal:  J Biol Chem       Date:  2003-07-02       Impact factor: 5.157

9.  Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells.

Authors:  Peter C Scacheri; Orit Rozenblatt-Rosen; Natasha J Caplen; Tyra G Wolfsberg; Lowell Umayam; Jeffrey C Lee; Christina M Hughes; Kalai Selvi Shanmugam; Arindam Bhattacharjee; Matthew Meyerson; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-09       Impact factor: 11.205

Review 10.  Localizing the proteome.

Authors:  Jeremy C Simpson; Rainer Pepperkok
Journal:  Genome Biol       Date:  2003-11-18       Impact factor: 13.583

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  49 in total

1.  Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels.

Authors:  Michal Domanski; Kelly Molloy; Hua Jiang; Brian T Chait; Michael P Rout; Torben Heick Jensen; John LaCava
Journal:  Biotechniques       Date:  2012-05       Impact factor: 1.993

2.  MISSION esiRNA for RNAi screening in mammalian cells.

Authors:  Mirko Theis; Frank Buchholz
Journal:  J Vis Exp       Date:  2010-05-12       Impact factor: 1.355

Review 3.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

Review 4.  RNA interference: ready to silence cancer?

Authors:  Simone Mocellin; Rodolfo Costa; Donato Nitti
Journal:  J Mol Med (Berl)       Date:  2005-11-09       Impact factor: 4.599

Review 5.  RNAi in embryonic stem cells.

Authors:  Li Ding; Frank Buchholz
Journal:  Stem Cell Rev       Date:  2006       Impact factor: 5.739

6.  The Grb2/PLD2 interaction is essential for lipase activity, intracellular localization and signaling in response to EGF.

Authors:  Mauricio Di Fulvio; Kathleen Frondorf; Karen M Henkels; Nicholas Lehman; Julian Gomez-Cambronero
Journal:  J Mol Biol       Date:  2007-01-12       Impact factor: 5.469

7.  Short-hairpin RNA-mediated stable silencing of Grb2 impairs cell growth and DNA synthesis.

Authors:  Mauricio Di Fulvio; Karen M Henkels; Julian Gomez-Cambronero
Journal:  Biochem Biophys Res Commun       Date:  2007-04-10       Impact factor: 3.575

8.  Response to Shuda et al.

Authors:  Sabrina Angermeyer; Sonja Hesbacher; Jürgen C Becker; David Schrama; Roland Houben
Journal:  J Invest Dermatol       Date:  2013-11-12       Impact factor: 8.551

9.  CEP192 interacts physically and functionally with the K63-deubiquitinase CYLD to promote mitotic spindle assembly.

Authors:  Maria Ana Gomez-Ferreria; Mikhail Bashkurov; Michael Mullin; Anne-Claude Gingras; Laurence Pelletier
Journal:  Cell Cycle       Date:  2012-08-16       Impact factor: 4.534

10.  A novel role of myosin VI in human prostate cancer.

Authors:  Thomas A Dunn; Shenglin Chen; Dennis A Faith; Jessica L Hicks; Elizabeth A Platz; Yidong Chen; Charles M Ewing; Jurga Sauvageot; William B Isaacs; Angelo M De Marzo; Jun Luo
Journal:  Am J Pathol       Date:  2006-11       Impact factor: 4.307

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