Literature DB >> 15680970

Structure and dynamic properties of nucleosome core particles.

Srinivas Chakravarthy1, Young-Jun Park, Jayanth Chodaparambil, Rajeswari S Edayathumangalam, Karolin Luger.   

Abstract

It is now widely recognized that the packaging of genomic DNA, together with core histones, linker histones, and other functional proteins into chromatin profoundly influences nuclear processes such as transcription, replication, DNA repair, and recombination. Whereas earlier structural studies portrayed nucleosomes (the basic repeating unit of chromatin) as monolithic and static macromolecular assemblies, we now know that they are highly dynamic and capable of extensive crosstalk with the cellular machinery. Histone variants have evolved to locally alter chromatin structure, whereas histone chaperones and other cellular factors promote histone exchange and chromatin fluidity. Both of these phenomena likely facilitate interconversion between different chromatin states that show varying degrees of transcriptional activity.

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Year:  2005        PMID: 15680970     DOI: 10.1016/j.febslet.2004.11.030

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  20 in total

1.  Histone depletion facilitates chromatin loops on the kilobasepair scale.

Authors:  Philipp M Diesinger; Susanne Kunkel; Jörg Langowski; Dieter W Heermann
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

Review 2.  Histone structure and nucleosome stability.

Authors:  Leonardo Mariño-Ramírez; Maricel G Kann; Benjamin A Shoemaker; David Landsman
Journal:  Expert Rev Proteomics       Date:  2005-10       Impact factor: 3.940

3.  The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin.

Authors:  Philipp M Diesinger; Dieter W Heermann
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

4.  Depletion effects massively change chromatin properties and influence genome folding.

Authors:  Philipp M Diesinger; Dieter W Heermann
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

5.  High-Throughput Quantitative Top-Down Proteomics: Histone H4.

Authors:  Matthew V Holt; Tao Wang; Nicolas L Young
Journal:  J Am Soc Mass Spectrom       Date:  2019-11-18       Impact factor: 3.109

6.  Cell death patterns in Arabidopsis cells subjected to four physiological stressors indicate multiple signalling pathways and cell cycle phase specificity.

Authors:  Ranjith Pathirana; Phillip West; Duncan Hedderley; Jocelyn Eason
Journal:  Protoplasma       Date:  2016-05-18       Impact factor: 3.356

7.  Dynamics of nucleosomes revealed by time-lapse atomic force microscopy.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

Review 8.  A non-homogeneous hidden-state model on first order differences for automatic detection of nucleosome positions.

Authors:  Pei Fen Kuan; Dana Huebert; Audrey Gasch; Sunduz Keles
Journal:  Stat Appl Genet Mol Biol       Date:  2009-06-19

9.  Entropy gives rise to topologically associating domains.

Authors:  Paula A Vasquez; Caitlin Hult; David Adalsteinsson; Josh Lawrimore; Mark G Forest; Kerry Bloom
Journal:  Nucleic Acids Res       Date:  2016-06-02       Impact factor: 16.971

Review 10.  Dynamic protein methylation in chromatin biology.

Authors:  S S Ng; W W Yue; U Oppermann; R J Klose
Journal:  Cell Mol Life Sci       Date:  2009-02       Impact factor: 9.261

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