Literature DB >> 16209651

Histone structure and nucleosome stability.

Leonardo Mariño-Ramírez1, Maricel G Kann, Benjamin A Shoemaker, David Landsman.   

Abstract

Histone proteins play essential structural and functional roles in the transition between active and inactive chromatin states. Although histones have a high degree of conservation due to constraints to maintain the overall structure of the nucleosomal octameric core, variants have evolved to assume diverse roles in gene regulation and epigenetic silencing. Histone variants, post-translational modifications and interactions with chromatin remodeling complexes influence DNA replication, transcription, repair and recombination. The authors review recent findings on the structure of chromatin that confirm previous interparticle interactions observed in crystal structures.

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Year:  2005        PMID: 16209651      PMCID: PMC1831843          DOI: 10.1586/14789450.2.5.719

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  69 in total

1.  The major subacrosomal occupant of bull spermatozoa is a novel histone H2B variant associated with the forming acrosome during spermiogenesis.

Authors:  Ritu B Aul; Richard J Oko
Journal:  Dev Biol       Date:  2002-02-15       Impact factor: 3.582

Review 2.  Structure and dynamic behavior of nucleosomes.

Authors:  Karolin Luger
Journal:  Curr Opin Genet Dev       Date:  2003-04       Impact factor: 5.578

3.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

4.  Structures and interactions of the core histone tail domains.

Authors:  Chunyang Zheng; Jeffrey J Hayes
Journal:  Biopolymers       Date:  2003-04       Impact factor: 2.505

5.  The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling.

Authors:  Dimitar Angelov; Annie Molla; Pierre-Yves Perche; Fabienne Hans; Jacques Côté; Saadi Khochbin; Philippe Bouvet; Stefan Dimitrov
Journal:  Mol Cell       Date:  2003-04       Impact factor: 17.970

6.  The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.

Authors:  Kami Ahmad; Steven Henikoff
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

7.  Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin.

Authors:  Marc D Meneghini; Michelle Wu; Hiten D Madhani
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

8.  Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks.

Authors:  Arkady Celeste; Oscar Fernandez-Capetillo; Michael J Kruhlak; Duane R Pilch; David W Staudt; Alicia Lee; Robert F Bonner; William M Bonner; André Nussenzweig
Journal:  Nat Cell Biol       Date:  2003-07       Impact factor: 28.824

9.  Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.

Authors:  Curt A Davey; David F Sargent; Karolin Luger; Armin W Maeder; Timothy J Richmond
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

10.  Human testis/sperm-specific histone H2B (hTSH2B). Molecular cloning and characterization.

Authors:  Andrei O Zalensky; Joseph S Siino; Arunas A Gineitis; Irina A Zalenskaya; Nikolai V Tomilin; Peter Yau; E Morton Bradbury
Journal:  J Biol Chem       Date:  2002-09-03       Impact factor: 5.157

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  76 in total

1.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Finding biologically relevant protein domain interactions: conserved binding mode analysis.

Authors:  Benjamin A Shoemaker; Anna R Panchenko; Stephen H Bryant
Journal:  Protein Sci       Date:  2005-12-29       Impact factor: 6.725

3.  Direct visualization of the endomitotic cell cycle in living megakaryocytes: differential patterns in low and high ploidy cells.

Authors:  Nicholas Papadantonakis; Maria Makitalo; Donald J McCrann; Kenian Liu; Hao G Nguyen; Greg Martin; Sunita Patel-Hett; Joseph E Italiano; Katya Ravid
Journal:  Cell Cycle       Date:  2008-05-21       Impact factor: 4.534

4.  Multicellular Tumor Spheroids Combined with Mass Spectrometric Histone Analysis To Evaluate Epigenetic Drugs.

Authors:  Peter E Feist; Simone Sidoli; Xin Liu; Monica M Schroll; Sharif Rahmy; Rina Fujiwara; Benjamin A Garcia; Amanda B Hummon
Journal:  Anal Chem       Date:  2017-02-21       Impact factor: 6.986

5.  Identification and Characterization of AES-135, a Hydroxamic Acid-Based HDAC Inhibitor That Prolongs Survival in an Orthotopic Mouse Model of Pancreatic Cancer.

Authors:  Andrew E Shouksmith; Fenil Shah; Michelle L Grimard; Justyna M Gawel; Yasir S Raouf; Mulu Geletu; Angelika Berger-Becvar; Elvin D de Araujo; H Artee Luchman; William L Heaton; David Bakhshinyan; Ashley A Adile; Chitra Venugopal; Thomas O'Hare; Michael W Deininger; Sheila K Singh; Stephen F Konieczny; Samuel Weiss; Melissa L Fishel; Patrick T Gunning
Journal:  J Med Chem       Date:  2019-03-06       Impact factor: 7.446

6.  Knockdown of BC200 RNA expression reduces cell migration and invasion by destabilizing mRNA for calcium-binding protein S100A11.

Authors:  Heegwon Shin; Jungmin Lee; Youngmi Kim; Seonghui Jang; Yunhee Lee; Semi Kim; Younghoon Lee
Journal:  RNA Biol       Date:  2017-03-01       Impact factor: 4.652

7.  A Lamin-Associated Chromatin Model for Chromosome Organization.

Authors:  Ajoy Maji; Jahir A Ahmed; Subhankar Roy; Buddhapriya Chakrabarti; Mithun K Mitra
Journal:  Biophys J       Date:  2020-05-20       Impact factor: 4.033

Review 8.  Sepsis: in search of cure.

Authors:  Chikkamenahalli Lakshminarayana Lakshmikanth; Shancy Petsel Jacob; Vyala Hanumanthareddy Chaithra; Hugo Caire de Castro-Faria-Neto; Gopal Kedihithlu Marathe
Journal:  Inflamm Res       Date:  2016-03-19       Impact factor: 4.575

9.  Determining protein biomarkers for DLBCL using FFPE tissues from HIV negative and HIV positive patients.

Authors:  Pumza Magangane; Raveendra Sookhayi; Dhirendra Govender; Richard Naidoo
Journal:  J Mol Histol       Date:  2016-10-01       Impact factor: 2.611

10.  Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications.

Authors:  Tao Wu; Tiezheng Yuan; Sau-Na Tsai; Chunmei Wang; Sai-Ming Sun; Hon-Ming Lam; Sai-Ming Ngai
Journal:  BMC Plant Biol       Date:  2009-07-31       Impact factor: 4.215

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