Literature DB >> 17209543

Solution NMR of large molecules and assemblies.

Mark P Foster1, Craig A McElroy, Carlos D Amero.   

Abstract

Solution NMR spectroscopy represents a powerful tool for examining the structure and function of biological macromolecules. The advent of multidimensional (2D-4D) NMR, together with the widespread use of uniform isotopic labeling of proteins and RNA with the NMR-active isotopes, 15N and 13C, opened the door to detailed analyses of macromolecular structure, dynamics, and interactions of smaller macromolecules (< approximately 25 kDa). Over the past 10 years, advances in NMR and isotope labeling methods have expanded the range of NMR-tractable targets by at least an order of magnitude. Here we briefly describe the methodological advances that allow NMR spectroscopy of large macromolecules and their complexes and provide a perspective on the wide range of applications of NMR to biochemical problems.

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Year:  2007        PMID: 17209543      PMCID: PMC2596980          DOI: 10.1021/bi0621314

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  65 in total

1.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling.

Authors:  Insil Kim; Peter J Lukavsky; Joseph D Puglisi
Journal:  J Am Chem Soc       Date:  2002-08-14       Impact factor: 15.419

3.  Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g.

Authors:  Vitali Tugarinov; Ranjith Muhandiram; Ayeda Ayed; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

4.  Determination of the interface of a large protein complex by transferred cross-saturation measurements.

Authors:  Tamiji Nakanishi; Mayumi Miyazawa; Masayoshi Sakakura; Hiroaki Terasawa; Hideo Takahashi; Ichio Shimada
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

5.  Quaternary structure of hemoglobin in solution.

Authors:  Jonathan A Lukin; Georg Kontaxis; Virgil Simplaceanu; Yue Yuan; Ad Bax; Chien Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

6.  Collagen-binding mode of vWF-A3 domain determined by a transferred cross-saturation experiment.

Authors:  Noritaka Nishida; Hiromi Sumikawa; Masayoshi Sakakura; Nobuhisa Shimba; Hideo Takahashi; Hiroaki Terasawa; Ei-Ichiro Suzuki; Ichio Shimada
Journal:  Nat Struct Biol       Date:  2003-01

Review 7.  Weak alignment offers new NMR opportunities to study protein structure and dynamics.

Authors:  Ad Bax
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

Review 8.  Solution NMR of membrane proteins: practice and challenges.

Authors:  Charles R Sanders; Frank Sönnichsen
Journal:  Magn Reson Chem       Date:  2006-07       Impact factor: 2.447

9.  TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility.

Authors:  Craig McElroy; Amanda Manfredo; Alice Wendt; Paul Gollnick; Mark Foster
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

10.  Solution structure and dynamics of the outer membrane enzyme PagP by NMR.

Authors:  Peter M Hwang; Wing-Yiu Choy; Eileen I Lo; Lu Chen; Julie D Forman-Kay; Christian R H Raetz; Gilbert G Privé; Russell E Bishop; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-30       Impact factor: 11.205

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  42 in total

1.  Identification and removal of nitroxide spin label contaminant: impact on PRE studies of α-helical membrane proteins in detergent.

Authors:  Brett M Kroncke; Linda Columbus
Journal:  Protein Sci       Date:  2012-03-02       Impact factor: 6.725

Review 2.  Studying DNA-protein interactions with single-molecule Förster resonance energy transfer.

Authors:  Shazia Farooq; Carel Fijen; Johannes Hohlbein
Journal:  Protoplasma       Date:  2013-12-28       Impact factor: 3.356

3.  Post-translational modifications differentially affect IgG1 conformation and receptor binding.

Authors:  Damian Houde; Yucai Peng; Steven A Berkowitz; John R Engen
Journal:  Mol Cell Proteomics       Date:  2010-01-26       Impact factor: 5.911

Review 4.  Electron tomography in nanoparticle imaging and analysis.

Authors:  Jeffrey S Lengyel; Jacqueline L S Milne; Sriram Subramaniam
Journal:  Nanomedicine (Lond)       Date:  2008-02       Impact factor: 5.307

5.  Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex.

Authors:  Anthony Bugaut; Raphaël Rodriguez; Sunita Kumari; Shang-Te Danny Hsu; Shankar Balasubramanian
Journal:  Org Biomol Chem       Date:  2010-04-30       Impact factor: 3.876

Review 6.  An introduction to NMR-based approaches for measuring protein dynamics.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  Biochim Biophys Acta       Date:  2010-11-06

7.  Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics.

Authors:  Ian R Kleckner; Paul Gollnick; Mark P Foster
Journal:  J Mol Biol       Date:  2011-11-15       Impact factor: 5.469

8.  Rapid Quantification of Protein-Ligand Binding via 19F NMR Lineshape Analysis.

Authors:  Samantha S Stadmiller; Jhoan S Aguilar; Christopher A Waudby; Gary J Pielak
Journal:  Biophys J       Date:  2020-04-15       Impact factor: 4.033

Review 9.  NMR techniques in studying water in biotechnological systems.

Authors:  Victor V Rodin
Journal:  Biophys Rev       Date:  2020-06-15

10.  Deuterium-Enhanced Raman Spectroscopy for Histidine pKa Determination in a pH-Responsive Hydrogel.

Authors:  Gabriel A Braun; Brett H Pogostin; Milda Pucetaite; Casey H Londergan; Karin S Åkerfeldt
Journal:  Biophys J       Date:  2020-09-23       Impact factor: 4.033

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