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Literature DB >> 15635012

PCR amplification with primers based on IS2404 and GC-rich repeated sequence reveals polymorphism in Mycobacterium ulcerans.

Anthony Ablordey¹, Roman Kotlowski, Jean Swings, Françoise Portaels.

Abstract

We describe a simple genotyping method for Mycobacterium ulcerans based on PCR amplification of genomic regions between IS2404 and a frequently repeated GC-rich sequence. Application of this method to a global collection produced 10 M. ulcerans genotypes corresponding to their geographic origin.

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Year: 2005 PMID： 15635012 PMCID： PMC540136 DOI： 10.1128/JCM.43.1.448-451.2005

Source DB: PubMed Journal: J Clin Microbiol ISSN： 0095-1137 Impact factor: 5.948

10 in total

1. A simple PCR method for rapid genotype analysis of Mycobacterium ulcerans.

Authors: T Stinear; J K Davies; G A Jenkin; F Portaels; B C Ross; F Oppedisano; M Purcell; J A Hayman; P D Johnson
Journal: J Clin Microbiol Date: 2000-04 Impact factor: 5.948

2. The use of IS2404 restriction fragment length polymorphisms suggests the diversity of Mycobacterium ulcerans from different geographical areas.

Authors: K Chemlal; K De Ridder; P A Fonteyne; W M Meyers; J Swings; F Portaels
Journal: Am J Trop Med Hyg Date: 2001 May-Jun Impact factor: 2.345

Review 3. Repeated DNA sequences in mycobacteria.

Authors: S Poulet; S T Cole
Journal: Arch Microbiol Date: 1995-02 Impact factor: 2.552

4. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors: J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal: J Clin Microbiol Date: 1993-02 Impact factor: 5.948

5. Comparative genetic analysis of Mycobacterium ulcerans and Mycobacterium marinum reveals evidence of recent divergence.

Authors: T P Stinear; G A Jenkin; P D Johnson; J K Davies
Journal: J Bacteriol Date: 2000-11 Impact factor: 3.490

6. Evaluation of PCR-restriction profile analysis and IS2404 restriction fragment length polymorphism and amplified fragment length polymorphism fingerprinting for identification and typing of Mycobacterium ulcerans and M. marinum.

Authors: K Chemlal; G Huys; P A Fonteyne; V Vincent; A G Lopez; L Rigouts; J Swings; W M Meyers; F Portaels
Journal: J Clin Microbiol Date: 2001-09 Impact factor: 5.948

7. Identification and characterization of IS2404 and IS2606: two distinct repeated sequences for detection of Mycobacterium ulcerans by PCR.

Authors: T Stinear; B C Ross; J K Davies; L Marino; R M Robins-Browne; F Oppedisano; A Sievers; P D Johnson
Journal: J Clin Microbiol Date: 1999-04 Impact factor: 5.948

8. Variability in 3' end of 16S rRNA sequence of Mycobacterium ulcerans is related to geographic origin of isolates.

Authors: F Portaels; P A Fonteyene; H de Beenhouwer; P de Rijk; A Guédénon; J Hayman; M W Meyers
Journal: J Clin Microbiol Date: 1996-04 Impact factor: 5.948

9. PCR-based genotyping of Mycobacterium tuberculosis with new GC-rich repeated sequences and IS6110 inverted repeats used as primers.

Authors: Roman Kotłowski; Isdore Chola Shamputa; Nabil Abdullah El Aila; Anna Sajduda; Leen Rigouts; Armand van Deun; Françoise Portaels
Journal: J Clin Microbiol Date: 2004-01 Impact factor: 5.948

10. Characterization of an unusual Mycobacterium: a possible missing link between Mycobacterium marinum and Mycobacterium ulcerans.

Authors: K Chemlal; G Huys; F Laval; V Vincent; C Savage; C Gutierrez; M-A Laneelle; J Swings; W M Meyers; M Daffe; F Portaels
Journal: J Clin Microbiol Date: 2002-07 Impact factor: 5.948

10 in total

15 in total

1. Comparative nucleotide sequence analysis of polymorphic variable-number tandem-repeat Loci in Mycobacterium ulcerans.

Authors: Anthony Ablordey; Markus Hilty; Pieter Stragier; Jean Swings; Françoise Portaels
Journal: J Clin Microbiol Date: 2005-10 Impact factor: 5.948

2. Comparative Genomics Shows That Mycobacterium ulcerans Migration and Expansion Preceded the Rise of Buruli Ulcer in Southeastern Australia.

Authors: Andrew H Buultjens; Koen Vandelannoote; Conor J Meehan; Miriam Eddyani; Bouke C de Jong; Janet A M Fyfe; Maria Globan; Nicholas J Tobias; Jessica L Porter; Takehiro Tomita; Ee Laine Tay; Torsten Seemann; Benjamin P Howden; Paul D R Johnson; Timothy P Stinear
Journal: Appl Environ Microbiol Date: 2018-04-02 Impact factor: 4.792

3. Genetic diversity in Mycobacterium ulcerans isolates from Ghana revealed by a newly identified locus containing a variable number of tandem repeats.

Authors: Markus Hilty; Dorothy Yeboah-Manu; Daniel Boakye; Ernestina Mensah-Quainoo; Simona Rondini; Esther Schelling; David Ofori-Adjei; Françoise Portaels; Jakob Zinsstag; Gerd Pluschke
Journal: J Bacteriol Date: 2006-02 Impact factor: 3.490

4. Lack of insertional-deletional polymorphism in a collection of Mycobacterium ulcerans isolates from Ghanaian Buruli ulcer patients.

Authors: Michael Käser; Oliver Gutmann; Julia Hauser; Tim Stinear; Stewart Cole; Dorothy Yeboah-Manu; Gregor Dernick; Ulrich Certa; Gerd Pluschke
Journal: J Clin Microbiol Date: 2009-09-02 Impact factor: 5.948