Literature DB >> 16207997

Comparative nucleotide sequence analysis of polymorphic variable-number tandem-repeat Loci in Mycobacterium ulcerans.

Anthony Ablordey1, Markus Hilty, Pieter Stragier, Jean Swings, Françoise Portaels.   

Abstract

We analyzed a set of variable-number tandem-repeat (VNTR) loci to assess their nucleotide sequence diversity in isolates of three Mycobacterium ulcerans genotypes. Sequence variants in two loci resulted in intraspecies resolution of Southeast Asian and Asian genotypes in contrast to a homogenous sequence composition among African isolates. Nucleotide sequence polymorphism in repeat units can enhance discrimination of VNTR loci.

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Year:  2005        PMID： 16207997      PMCID： PMC1248468          DOI： 10.1128/JCM.43.10.5281-5284.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  17 in total

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Authors:  V V Lévy-Frébault; F Portaels
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2.  Multilocus variable-number tandem repeat typing of Mycobacterium ulcerans.

Authors:  Anthony Ablordey; Jean Swings; Christine Hubans; Karim Chemlal; Camille Locht; Françoise Portaels; Philip Supply
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

3.  A simple PCR method for rapid genotype analysis of Mycobacterium ulcerans.

Authors:  T Stinear; J K Davies; G A Jenkin; F Portaels; B C Ross; F Oppedisano; M Purcell; J A Hayman; P D Johnson
Journal:  J Clin Microbiol       Date:  2000-04       Impact factor: 5.948

4.  Development of variable-number tandem repeat typing of Mycobacterium bovis: comparison of results with those obtained by using existing exact tandem repeats and spoligotyping.

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5.  The use of IS2404 restriction fragment length polymorphisms suggests the diversity of Mycobacterium ulcerans from different geographical areas.

Authors:  K Chemlal; K De Ridder; P A Fonteyne; W M Meyers; J Swings; F Portaels
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6.  Comparative genetic analysis of Mycobacterium ulcerans and Mycobacterium marinum reveals evidence of recent divergence.

Authors:  T P Stinear; G A Jenkin; P D Johnson; J K Davies
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

7.  Evaluation of PCR-restriction profile analysis and IS2404 restriction fragment length polymorphism and amplified fragment length polymorphism fingerprinting for identification and typing of Mycobacterium ulcerans and M. marinum.

Authors:  K Chemlal; G Huys; P A Fonteyne; V Vincent; A G Lopez; L Rigouts; J Swings; W M Meyers; F Portaels
Journal:  J Clin Microbiol       Date:  2001-09       Impact factor: 5.948

8.  Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains.

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Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

Review 9.  Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales.

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10.  Differentiation of strains in Mycobacterium tuberculosis complex by DNA sequence polymorphisms, including rapid identification of M. bovis BCG.

Authors:  R Frothingham
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  14 in total

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5.  Genetic diversity in Mycobacterium ulcerans isolates from Ghana revealed by a newly identified locus containing a variable number of tandem repeats.

Authors:  Markus Hilty; Dorothy Yeboah-Manu; Daniel Boakye; Ernestina Mensah-Quainoo; Simona Rondini; Esther Schelling; David Ofori-Adjei; Françoise Portaels; Jakob Zinsstag; Gerd Pluschke
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6.  Development and application of two multiplex real-time PCR assays for the detection of Mycobacterium ulcerans in clinical and environmental samples.

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7.  Lack of insertional-deletional polymorphism in a collection of Mycobacterium ulcerans isolates from Ghanaian Buruli ulcer patients.

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Journal:  J Clin Microbiol       Date:  2009-09-02       Impact factor: 5.948

9.  Heterogeneity among Mycobacterium ulcerans from French Guiana revealed by multilocus variable number tandem repeat analysis (MLVA).

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Journal:  PLoS One       Date:  2015-02-23       Impact factor: 3.240

10.  Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing.

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