Literature DB >> 14715782

PCR-based genotyping of Mycobacterium tuberculosis with new GC-rich repeated sequences and IS6110 inverted repeats used as primers.

Roman Kotłowski1, Isdore Chola Shamputa, Nabil Abdullah El Aila, Anna Sajduda, Leen Rigouts, Armand van Deun, Françoise Portaels.   

Abstract

In the present study we attempted to develop a PCR-based epidemiological tool for the differentiation of Mycobacterium tuberculosis isolates. Use of the designed primers Mtb1 (5'-CCG-GCG-GGG-CCG-GCG-G) and Mtb2 (5'-CGG-CGG-CAA-CGG-CGG-C) targeting frequently repeated 16-bp sequences in combination with primers sited at the inverted repeats flanking IS6110 allowed differentiation of M. tuberculosis isolates.

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Year:  2004        PMID： 14715782      PMCID： PMC321654          DOI： 10.1128/JCM.42.1.372-377.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Exogenous reinfection as a cause of recurrent tuberculosis after curative treatment.

Authors:  A van Rie; R Warren; M Richardson; T C Victor; R P Gie; D A Enarson; N Beyers; P D van Helden
Journal:  N Engl J Med       Date:  1999-10-14       Impact factor: 91.245

2.  Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis.

Authors:  Mårten Kivi; Xuemin Liu; Soumya Raychaudhuri; Russ B Altman; Peter M Small
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

3.  A reliable amplification technique for the characterization of genomic DNA sequences flanking insertion sequences.

Authors:  G Prod'hom; B Lagier; V Pelicic; A J Hance; B Gicquel; C Guilhot
Journal:  FEMS Microbiol Lett       Date:  1998-01-01       Impact factor: 2.742

4.  Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis.

Authors:  D van Soolingen; P W Hermans; P E de Haas; D R Soll; J D van Embden
Journal:  J Clin Microbiol       Date:  1991-11       Impact factor: 5.948

5.  Double-repetitive-element PCR method for subtyping Mycobacterium tuberculosis clinical isolates.

Authors:  C R Friedman; M Y Stoeckle; W D Johnson; L W Riley
Journal:  J Clin Microbiol       Date:  1995-05       Impact factor: 5.948

Review 6.  Repeated DNA sequences in mycobacteria.

Authors:  S Poulet; S T Cole
Journal:  Arch Microbiol       Date:  1995-02       Impact factor: 2.552

7.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors:  J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

8.  The complete genome sequence of Mycobacterium bovis.

Authors:  Thierry Garnier; Karin Eiglmeier; Jean-Christophe Camus; Nadine Medina; Huma Mansoor; Melinda Pryor; Stephanie Duthoy; Sophie Grondin; Celine Lacroix; Christel Monsempe; Sylvie Simon; Barbara Harris; Rebecca Atkin; Jon Doggett; Rebecca Mayes; Lisa Keating; Paul R Wheeler; Julian Parkhill; Bart G Barrell; Stewart T Cole; Stephen V Gordon; R Glyn Hewinson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-03       Impact factor: 11.205

9.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

10.  Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.

Authors:  R D Fleischmann; D Alland; J A Eisen; L Carpenter; O White; J Peterson; R DeBoy; R Dodson; M Gwinn; D Haft; E Hickey; J F Kolonay; W C Nelson; L A Umayam; M Ermolaeva; S L Salzberg; A Delcher; T Utterback; J Weidman; H Khouri; J Gill; A Mikula; W Bishai; W R Jacobs; J C Venter; C M Fraser
Journal:  J Bacteriol       Date:  2002-10       Impact factor: 3.490
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  4 in total

Review 1.  Methodological and Clinical Aspects of the Molecular Epidemiology of Mycobacterium tuberculosis and Other Mycobacteria.

Authors:  Tomasz Jagielski; Alina Minias; Jakko van Ingen; Nalin Rastogi; Anna Brzostek; Anna Żaczek; Jarosław Dziadek
Journal:  Clin Microbiol Rev       Date:  2016-04       Impact factor: 26.132

2.  PCR amplification with primers based on IS2404 and GC-rich repeated sequence reveals polymorphism in Mycobacterium ulcerans.

Authors:  Anthony Ablordey; Roman Kotlowski; Jean Swings; Françoise Portaels
Journal:  J Clin Microbiol       Date:  2005-01       Impact factor: 5.948

3.  Comparison of the genetic convergence between mycobacterium strains by three RFLP-based methods in central province of Iran.

Authors:  Aliasghar Farazi; Mansoureh Jabbariasl; Keyvan Tadayon; Nader Mossavar; Roohollah Keshavarz; Seyed Davood Hoseini
Journal:  Iran J Basic Med Sci       Date:  2014-06       Impact factor: 2.699

Review 4.  Current methods in the molecular typing of Mycobacterium tuberculosis and other mycobacteria.

Authors:  Tomasz Jagielski; Jakko van Ingen; Nalin Rastogi; Jarosław Dziadek; Paweł K Mazur; Jacek Bielecki
Journal:  Biomed Res Int       Date:  2014-01-05       Impact factor: 3.411
  4 in total

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