Literature DB >> 15630094

Molecular basis for amyloid fibril formation and stability.

O Sumner Makin1, Edward Atkins, Pawel Sikorski, Jan Johansson, Louise C Serpell.   

Abstract

The molecular structure of the amyloid fibril has remained elusive because of the difficulty of growing well diffracting crystals. By using a sequence-designed polypeptide, we have produced crystals of an amyloid fiber. These crystals diffract to high resolution (1 A) by electron and x-ray diffraction, enabling us to determine a detailed structure for amyloid. The structure reveals that the polypeptides form fibrous crystals composed of antiparallel beta-sheets in a cross-beta arrangement, characteristic of all amyloid fibers, and allows us to determine the side-chain packing within an amyloid fiber. The antiparallel beta-sheets are zipped together by means of pi-bonding between adjacent phenylalanine rings and salt-bridges between charge pairs (glutamic acid-lysine), thus controlling and stabilizing the structure. These interactions are likely to be important in the formation and stability of other amyloid fibrils.

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Year:  2005        PMID: 15630094      PMCID: PMC544296          DOI: 10.1073/pnas.0406847102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Conformational transitions of islet amyloid polypeptide (IAPP) in amyloid formation in vitro.

Authors:  R Kayed; J Bernhagen; N Greenfield; K Sweimeh; H Brunner; W Voelter; A Kapurniotu
Journal:  J Mol Biol       Date:  1999-04-09       Impact factor: 5.469

2.  Sequence determinants of amyloid fibril formation.

Authors:  Manuela López de la Paz; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

3.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

4.  Folding into a beta-hairpin can prevent amyloid fibril formation.

Authors:  Waltteri Hosia; Niklas Bark; Edvards Liepinsh; Agneta Tjernberg; Bengt Persson; Dan Hallén; Johan Thyberg; Jan Johansson; Lars Tjernberg
Journal:  Biochemistry       Date:  2004-04-27       Impact factor: 3.162

5.  Peptide sequence and amyloid formation; molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs.

Authors:  David Zanuy; Yair Porat; Ehud Gazit; Ruth Nussinov
Journal:  Structure       Date:  2004-03       Impact factor: 5.006

6.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

7.  "Cross-beta" conformation in proteins.

Authors:  A J Geddes; K D Parker; E D Atkins; E Beighton
Journal:  J Mol Biol       Date:  1968-03-14       Impact factor: 5.469

8.  X-ray diffraction studies on amyloid filaments.

Authors:  E D Eanes; G G Glenner
Journal:  J Histochem Cytochem       Date:  1968-11       Impact factor: 2.479

9.  Mutations that reduce aggregation of the Alzheimer's Abeta42 peptide: an unbiased search for the sequence determinants of Abeta amyloidogenesis.

Authors:  Christine Wurth; Nathalie K Guimard; Michael H Hecht
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

10.  Amyloid fibril formation by pentapeptide and tetrapeptide fragments of human calcitonin.

Authors:  Meital Reches; Yair Porat; Ehud Gazit
Journal:  J Biol Chem       Date:  2002-07-02       Impact factor: 5.157

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  147 in total

1.  Size distribution of amyloid nanofibrils.

Authors:  Raffaela Cabriolu; Dimo Kashchiev; Stefan Auer
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Mapping conformational ensembles of aβ oligomers in molecular dynamics simulations.

Authors:  Seongwon Kim; Takako Takeda; Dmitri K Klimov
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

Review 3.  Emergence and natural selection of drug-resistant prions.

Authors:  James Shorter
Journal:  Mol Biosyst       Date:  2010-04-27

4.  Globular state in the oligomers formed by Abeta peptides.

Authors:  Seongwon Kim; Takako Takeda; Dmitri K Klimov
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

Review 5.  Molecular Signaling Mechanisms of Natural and Synthetic Retinoids for Inhibition of Pathogenesis in Alzheimer's Disease.

Authors:  Mrinmay Chakrabarti; Alexander J McDonald; J Will Reed; Melissa A Moss; Bhaskar C Das; Swapan K Ray
Journal:  J Alzheimers Dis       Date:  2016       Impact factor: 4.472

6.  Carbon nanotube inhibits the formation of β-sheet-rich oligomers of the Alzheimer's amyloid-β(16-22) peptide.

Authors:  Huiyu Li; Yin Luo; Philippe Derreumaux; Guanghong Wei
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

7.  Organism complexity anti-correlates with proteomic beta-aggregation propensity.

Authors:  Gian Gaetano Tartaglia; Riccardo Pellarin; Andrea Cavalli; Amedeo Caflisch
Journal:  Protein Sci       Date:  2005-09-09       Impact factor: 6.725

8.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

9.  Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins.

Authors:  Wei Ye; Dingjue Ji; Wei Wang; Ray Luo; Hai-Feng Chen
Journal:  J Chem Inf Model       Date:  2015-05-13       Impact factor: 4.956

10.  Parallel beta-sheets and polar zippers in amyloid fibrils formed by residues 10-39 of the yeast prion protein Ure2p.

Authors:  Jerry C C Chan; Nathan A Oyler; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

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