Literature DB >> 19669524

Influence of distal residue B10 on CO dynamics in myoglobin and neuroglobin.

Karin Nienhaus1, G Ulrich Nienhaus.   

Abstract

For many years, myoglobin has served as a paradigm for structure-function studies in proteins. Ligand binding and migration within myoglobin has been studied in great detail by crystallography and spectroscopy, showing that gaseous ligands such as O(2), CO, and NO not only bind to the heme iron but may also reside transiently in three internal ligand docking sites, the primary docking site B and secondary sites C and D. These sites affect ligand association and dissociation in specific ways. Neuroglobin is another vertebrate heme protein that also binds small ligands. Ligand migration pathways in neuroglobin have not yet been elucidated. Here, we have used Fourier transform infrared temperature derivative spectroscopy at cryogenic temperatures to compare the influence of the side chain volume of amino acid residue B10 on ligand migration to and rebinding from docking sites in myoglobin and neuroglobin.

Entities:  

Year:  2008        PMID: 19669524      PMCID: PMC2565765          DOI: 10.1007/s10867-008-9059-2

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  65 in total

1.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Probing electric fields in protein cavities by using the vibrational stark effect of carbon monoxide.

Authors:  Hartwig Lehle; Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Stephanus Fengler; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

3.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

4.  Ligand migration in sperm whale myoglobin.

Authors:  E E Scott; Q H Gibson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

5.  Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues.

Authors:  Thorsten Burmester; Bettina Ebner; Bettina Weich; Thomas Hankeln
Journal:  Mol Biol Evol       Date:  2002-04       Impact factor: 16.240

6.  Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin.

Authors:  B F Campbell; M R Chance; J M Friedman
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

7.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

8.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
Journal:  Proteins       Date:  1998-03-01

9.  Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.

Authors:  J O Alben; D Beece; S F Bowne; W Doster; L Eisenstein; H Frauenfelder; D Good; J D McDonald; M C Marden; P P Moh; L Reinisch; A H Reynolds; E Shyamsunder; K T Yue
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

10.  Crystal structure of Asian elephant (Elephas maximus) cyano-metmyoglobin at 1.78-A resolution. Phe29(B10) accounts for its unusual ligand binding properties.

Authors:  D A Bisig; E E Di Iorio; K Diederichs; K H Winterhalter; K Piontek
Journal:  J Biol Chem       Date:  1995-09-01       Impact factor: 5.157

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  2 in total

Review 1.  Ligand diffusion in globins: simulations versus experiment.

Authors:  Ron Elber
Journal:  Curr Opin Struct Biol       Date:  2010-01-29       Impact factor: 6.809

2.  Nitric oxide dynamics in truncated hemoglobin: docking sites, migration pathways, and vibrational spectroscopy from molecular dynamics simulations.

Authors:  Sabyashachi Mishra; Markus Meuwly
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

  2 in total

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