Literature DB >> 15591352

A quantitative assessment of models for voltage-dependent gating of ion channels.

Michael Grabe1, Harold Lecar, Yuh Nung Jan, Lily Yeh Jan.   

Abstract

Voltage-gated ion channels open and close, or "gate," in response to changes in membrane potential. The electric field across the membrane-protein complex exerts forces on charged residues driving the channel into different functional conformations as the membrane potential changes. To act with the greatest sensitivity, charged residues must be positioned at key locations within or near the transmembrane region, which requires desolvating charged groups, a process that can be energetically prohibitive. Although there is good agreement on which residues are involved in this process for voltage-activated potassium channels, several different models of the sensor geometry and gating motions have been proposed. Here we incorporate low-resolution structural information about the channel into a Poisson-Boltzmann calculation to determine solvation barrier energies and gating charge values associated with each model. The principal voltage-sensing helix, S4, is represented explicitly, whereas all other regions are represented as featureless, dielectric media with complex boundaries. From our calculations, we conclude that a pure rotation of the S4 segment within the voltage sensor is incapable of producing the observed gating charge values, although this shortcoming can be partially remedied by first tipping and then minimally translating the S4 helix. Models in which the S4 segment has substantial interaction with the low-dielectric environment of the membrane incur solvation energies of hundreds of k(B)T, and activation times based on these energies are orders of magnitude slower than experimentally observed.

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Year:  2004        PMID: 15591352      PMCID: PMC539724          DOI: 10.1073/pnas.0408116101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  A localized interaction surface for voltage-sensing domains on the pore domain of a K+ channel.

Authors:  Y Li-Smerin; D H Hackos; K J Swartz
Journal:  Neuron       Date:  2000-02       Impact factor: 17.173

2.  Atomic scale movement of the voltage-sensing region in a potassium channel measured via spectroscopy.

Authors:  A Cha; G E Snyder; P R Selvin; F Bezanilla
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

3.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

4.  Probing protein electrostatics with a synthetic fluorescent amino acid.

Authors:  Bruce E Cohen; Tim B McAnaney; Eun Sun Park; Yuh Nung Jan; Steven G Boxer; Lily Yeh Jan
Journal:  Science       Date:  2002-05-31       Impact factor: 47.728

5.  Conformational switch between slow and fast gating modes: allosteric regulation of voltage sensor mobility in the EAG K+ channel.

Authors:  Roland Schönherr; Lidia M Mannuzzu; Ehud Y Isacoff; Stefan H Heinemann
Journal:  Neuron       Date:  2002-08-29       Impact factor: 17.173

6.  X-ray structure of a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Alice Lee; Jiayun Chen; Vanessa Ruta; Martine Cadene; Brian T Chait; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

7.  Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel.

Authors:  Randal B Bass; Pavel Strop; Margaret Barclay; Douglas C Rees
Journal:  Science       Date:  2002-11-22       Impact factor: 47.728

Review 8.  Electrostatic effects in macromolecules: fundamental concepts and practical modeling.

Authors:  A Warshel; A Papazyan
Journal:  Curr Opin Struct Biol       Date:  1998-04       Impact factor: 6.809

9.  Electrostatics and the gating pore of Shaker potassium channels.

Authors:  L D Islas; F J Sigworth
Journal:  J Gen Physiol       Date:  2001-01       Impact factor: 4.086

Review 10.  Voltage sensor movements.

Authors:  Francisco Bezanilla
Journal:  J Gen Physiol       Date:  2002-10       Impact factor: 4.086

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  38 in total

1.  Realistic simulation of the activation of voltage-gated ion channels.

Authors:  Anatoly Dryga; Suman Chakrabarty; Spyridon Vicatos; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

2.  A theoretical model for calculating voltage sensitivity of ion channels and the application on Kv1.2 potassium channel.

Authors:  Huaiyu Yang; Zhaobing Gao; Ping Li; Kunqian Yu; Ye Yu; Tian-Le Xu; Min Li; Hualiang Jiang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

Review 3.  Constant electric field simulations of the membrane potential illustrated with simple systems.

Authors:  James Gumbart; Fatemeh Khalili-Araghi; Marcos Sotomayor; Benoît Roux
Journal:  Biochim Biophys Acta       Date:  2011-10-05

4.  Distribution of amino acids in a lipid bilayer from computer simulations.

Authors:  Justin L MacCallum; W F Drew Bennett; D Peter Tieleman
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

5.  Free-energy profiles of membrane insertion of the M2 transmembrane peptide from influenza A virus.

Authors:  In-Chul Yeh; Mark A Olson; Michael S Lee; Anders Wallqvist
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

6.  A multiscale model linking ion-channel molecular dynamics and electrostatics to the cardiac action potential.

Authors:  Jonathan R Silva; Hua Pan; Dick Wu; Ali Nekouzadeh; Keith F Decker; Jianmin Cui; Nathan A Baker; David Sept; Yoram Rudy
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

7.  Initial response of the potassium channel voltage sensor to a transmembrane potential.

Authors:  Werner Treptow; Mounir Tarek; Michael L Klein
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  The electrostatics of VDAC: implications for selectivity and gating.

Authors:  Om P Choudhary; Rachna Ujwal; William Kowallis; Rob Coalson; Jeff Abramson; Michael Grabe
Journal:  J Mol Biol       Date:  2009-12-11       Impact factor: 5.469

9.  Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations.

Authors:  Andrew D Geragotelis; Mona L Wood; Hendrik Göddeke; Liang Hong; Parker D Webster; Eric K Wong; J Alfredo Freites; Francesco Tombola; Douglas J Tobias
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

10.  The sliding-helix voltage sensor: mesoscale views of a robust structure-function relationship.

Authors:  Alexander Peyser; Wolfgang Nonner
Journal:  Eur Biophys J       Date:  2012-08-21       Impact factor: 1.733

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