Literature DB >> 22907204

The sliding-helix voltage sensor: mesoscale views of a robust structure-function relationship.

Alexander Peyser1, Wolfgang Nonner.   

Abstract

The voltage sensor (VS) domain of voltage-gated ion channels underlies the electrical excitability of living cells. We simulate a mesoscale model of the VS domain to determine the functional consequences of some of its physical elements. Our mesoscale model is based on VS charges, linear dielectrics, and whole-body motion, applied to an S4 "sliding helix." The electrostatics under voltage-clamped boundary conditions are solved consistently using a boundary-element method. Based on electrostatic configurational energy, statistical-mechanical expectations of the experimentally observable relation between displaced charge and membrane voltage are predicted. Consequences of the model are investigated for variations of S4 configuration (α- and 3(10)-helical), countercharge alignment with S4 charges, protein polarizability, geometry of the gating canal, screening of S4 charges by the baths, and fixed charges located at the bath interfaces. The sliding-helix VS domain has an inherent electrostatic stability in the explored parameter space: countercharges present in the region of weak dielectric always retain an equivalent S4 charge in that region but allow sliding movements displacing 3-4 e (0). That movement is sensitive to small energy variations (<2 kT) along the path dependent on a number of electrostatic parameters tested in our simulations. These simulations show how the slope of the relation between displaced charge and voltage could be tuned in a channel.

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Year:  2012        PMID: 22907204      PMCID: PMC3448954          DOI: 10.1007/s00249-012-0847-z

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  36 in total

Review 1.  What are the dielectric "constants" of proteins and how to validate electrostatic models?

Authors:  C N Schutz; A Warshel
Journal:  Proteins       Date:  2001-09-01

2.  Electrostatic model of S4 motion in voltage-gated ion channels.

Authors:  Harold Lecar; H Peter Larsson; Michael Grabe
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

3.  Mechanism of voltage gating in potassium channels.

Authors:  Morten Ø Jensen; Vishwanath Jogini; David W Borhani; Abba E Leffler; Ron O Dror; David E Shaw
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

4.  Voltage sensor of Kv1.2: structural basis of electromechanical coupling.

Authors:  Stephen B Long; Ernest B Campbell; Roderick Mackinnon
Journal:  Science       Date:  2005-07-07       Impact factor: 47.728

5.  Two atomic constraints unambiguously position the S4 segment relative to S1 and S2 segments in the closed state of Shaker K channel.

Authors:  Fabiana V Campos; Baron Chanda; Benoît Roux; Francisco Bezanilla
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

6.  Divalent cation effects on the Shaker K channel suggest a pentapeptide sequence as determinant of functional surface charge density.

Authors:  F Elinder; Y Liu; P Arhem
Journal:  J Membr Biol       Date:  1998-09-15       Impact factor: 1.843

7.  Onsager's variational principle in soft matter.

Authors:  Masao Doi
Journal:  J Phys Condens Matter       Date:  2011-06-27       Impact factor: 2.333

8.  Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment.

Authors:  Stephen B Long; Xiao Tao; Ernest B Campbell; Roderick MacKinnon
Journal:  Nature       Date:  2007-11-15       Impact factor: 49.962

9.  Molecular dynamics investigation of the ω-current in the Kv1.2 voltage sensor domains.

Authors:  Fatemeh Khalili-Araghi; Emad Tajkhorshid; Benoît Roux; Klaus Schulten
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

10.  A gating charge transfer center in voltage sensors.

Authors:  Xiao Tao; Alice Lee; Walrati Limapichat; Dennis A Dougherty; Roderick MacKinnon
Journal:  Science       Date:  2010-04-02       Impact factor: 47.728

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  8 in total

1.  Domain and interdomain energetics underlying gating in Shaker-type Kv channels.

Authors:  Alexander Peyser; Dirk Gillespie; Roland Roth; Wolfgang Nonner
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 2.  Voltage-dependent gating in K channels: experimental results and quantitative models.

Authors:  Luigi Catacuzzeno; Luigi Sforna; Fabio Franciolini
Journal:  Pflugers Arch       Date:  2019-12-20       Impact factor: 3.657

3.  Simulation of Gating Currents of the Shaker K Channel Using a Brownian Model of the Voltage Sensor.

Authors:  Luigi Catacuzzeno; Fabio Franciolini
Journal:  Biophys J       Date:  2019-10-08       Impact factor: 4.033

4.  Caution is required in interpretation of mutations in the voltage sensing domain of voltage gated channels as evidence for gating mechanisms.

Authors:  Alisher M Kariev; Michael E Green
Journal:  Int J Mol Sci       Date:  2015-01-12       Impact factor: 5.923

5.  Cation Selectivity in Biological Cation Channels Using Experimental Structural Information and Statistical Mechanical Simulation.

Authors:  Justin John Finnerty; Alexander Peyser; Paolo Carloni
Journal:  PLoS One       Date:  2015-10-13       Impact factor: 3.240

6.  Continuum Gating Current Models Computed with Consistent Interactions.

Authors:  Tzyy-Leng Horng; Robert S Eisenberg; Chun Liu; Francisco Bezanilla
Journal:  Biophys J       Date:  2018-12-14       Impact factor: 4.033

7.  Multiscale modeling shows that dielectric differences make NaV channels faster than KV channels.

Authors:  Luigi Catacuzzeno; Luigi Sforna; Fabio Franciolini; Robert S Eisenberg
Journal:  J Gen Physiol       Date:  2021-02-01       Impact factor: 4.086

8.  The 70-year search for the voltage-sensing mechanism of ion channels.

Authors:  Luigi Catacuzzeno; Fabio Franciolini
Journal:  J Physiol       Date:  2022-07-06       Impact factor: 6.228

  8 in total

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