Literature DB >> 9631295

Electrostatic effects in macromolecules: fundamental concepts and practical modeling.

A Warshel1, A Papazyan.   

Abstract

The past few years have seen an exponential growth in the calculations of electrostatic energies of macromolecules and an increased recognition of the crucial role of electrostatic effects. This review considers the current state of the field. Focus is placed on calculations of pKas, redox potentials and binding energies in macromolecules and clarification of the fact that the value of the dielectric 'constant' of a protein depends on its definition and that small dielectric constants should not be used in describing charge-charge interactions by current continuum models.

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Year:  1998        PMID: 9631295     DOI: 10.1016/s0959-440x(98)80041-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  74 in total

1.  Implicit solvent model studies of the interactions of the influenza hemagglutinin fusion peptide with lipid bilayers.

Authors:  D Bechor; N Ben-Tal
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Tanford-Kirkwood electrostatics for protein modeling.

Authors:  J J Havranek; P B Harbury
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

3.  Protonation of lysine residues inverts cation/anion selectivity in a model channel.

Authors:  V Borisenko; M S Sansom; G A Woolley
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

4.  Local water bridges and protein conformational stability.

Authors:  M Petukhov; D Cregut; C M Soares; L Serrano
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

5.  Scoring functions: a view from the bench.

Authors:  J R Tame
Journal:  J Comput Aided Mol Des       Date:  1999-03       Impact factor: 3.686

6.  Amino acid intrinsic alpha-helical propensities III: positional dependence at several positions of C terminus.

Authors:  Michael Petukhov; Koichi Uegaki; Noboru Yumoto; Luis Serrano
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

7.  A critical investigation of the Tanford-Kirkwood scheme by means of Monte Carlo simulations.

Authors:  F L Da Silva; B Jönsson; R Penfold
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

8.  Calculations of free-energy contributions to protein-RNA complex stabilization.

Authors:  M A Olson
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

9.  Extent of hydrogen-bond protection in folded proteins: a constraint on packing architectures.

Authors:  Ariel Fernández; R Stephen Berry
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

10.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

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