Literature DB >> 15581566

Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity.

John A Gerlt1, Patricia C Babbitt, Ivan Rayment.   

Abstract

The members of the mechanistically diverse enolase superfamily catalyze different overall reactions. Each shares a partial reaction in which an active site base abstracts the alpha-proton of the carboxylate substrate to generate an enolate anion intermediate that is stabilized by coordination to the essential Mg(2+) ion; the intermediates are then directed to different products in the different active sites. In this minireview, our current understanding of structure/function relationships in the divergent members of the superfamily is reviewed, and the use of this knowledge for our future studies is proposed.

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Year:  2005        PMID: 15581566     DOI: 10.1016/j.abb.2004.07.034

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  84 in total

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Journal:  Biochem Soc Trans       Date:  2014-12       Impact factor: 5.407

2.  Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution.

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Journal:  Bioinformatics       Date:  2010-11-29       Impact factor: 6.937

3.  Evolution of a Catalytic Mechanism.

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4.  Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Authors:  Hongbo Xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir N Uversky
Journal:  J Proteome Res       Date:  2007-03-29       Impact factor: 4.466

Review 5.  Protein promiscuity and its implications for biotechnology.

Authors:  Irene Nobeli; Angelo D Favia; Janet M Thornton
Journal:  Nat Biotechnol       Date:  2009-02       Impact factor: 54.908

6.  Crystallization and preliminary X-ray diffraction experiments of arylmalonate decarboxylase from Alcaligenes bronchisepticus.

Authors:  Masayoshi Nakasako; Rika Obata; Ryosuke Okubo; Shyuichi Nakayama; Kenji Miyamoto; Hiromichi Ohta
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

Review 7.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

Review 8.  Specificity in transition state binding: the Pauling model revisited.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2013-02-04       Impact factor: 3.162

9.  In vitro activity of the nisin dehydratase NisB.

Authors:  Neha Garg; Luis M A Salazar-Ocampo; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

10.  Using catalytic atom maps to predict the catalytic functions present in enzyme active sites.

Authors:  Geoffrey R Nosrati; K N Houk
Journal:  Biochemistry       Date:  2012-08-30       Impact factor: 3.162

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