Literature DB >> 18607088

Crystallization and preliminary X-ray diffraction experiments of arylmalonate decarboxylase from Alcaligenes bronchisepticus.

Masayoshi Nakasako1, Rika Obata, Ryosuke Okubo, Shyuichi Nakayama, Kenji Miyamoto, Hiromichi Ohta.   

Abstract

Arylmalonate decarboxylase catalyses the enantioselective decarboxylation of alpha-aryl-alpha-methylmalonates to produce optically pure alpha-arylpropionates. The enzyme was crystallized with ammonium sulfate under alkaline pH conditions with the aim of understanding the mechanism of the enantioselective reaction. X-ray diffraction data collected to a resolution of 3.0 A at cryogenic temperature showed that the crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 83.13, b = 99.62, c = 139.64 A. This suggested that the asymmetric unit would contain between four and six molecules. Small-angle X-ray scattering revealed that the enzyme exists as a monomer in solution. Thus, the assembly of molecules in the asymmetric unit was likely to have been induced during the crystallization process.

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Year:  2008        PMID: 18607088      PMCID: PMC2443963          DOI: 10.1107/S1744309108014723

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

Review 1.  Screening for phasing atoms in protein crystallography.

Authors:  T J Boggon; L Shapiro
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

Review 2.  Understanding nature's strategies for enzyme-catalyzed racemization and epimerization.

Authors:  Martin E Tanner
Journal:  Acc Chem Res       Date:  2002-04       Impact factor: 22.384

3.  Active-site mobility revealed by the crystal structure of arylmalonate decarboxylase from Bordetella bronchiseptica.

Authors:  E Bartholomeus Kuettner; Antje Keim; Markus Kircher; Susann Rosmus; Norbert Sträter
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

4.  Molecular cloning and nucleotide sequencing of the aspartate racemase gene from lactic acid bacteria Streptococcus thermophilus.

Authors:  M Yohda; H Okada; H Kumagai
Journal:  Biochim Biophys Acta       Date:  1991-06-13

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Identification and sequencing of a gene encoding a hydantoin racemase from the native plasmid of Pseudomonas sp. strain NS671.

Authors:  K Watabe; T Ishikawa; Y Mukohara; H Nakamura
Journal:  J Bacteriol       Date:  1992-06       Impact factor: 3.490

7.  Purification and properties of a novel arylmalonate decarboxylase from Alcaligenes bronchisepticus KU 1201.

Authors:  K Miyamoto; H Ohta
Journal:  Eur J Biochem       Date:  1992-12-01

8.  Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization.

Authors:  Lijun Liu; Kousuke Iwata; Akiko Kita; Yutaka Kawarabayasi; Masafumi Yohda; Kunio Miki
Journal:  J Mol Biol       Date:  2002-05-31       Impact factor: 5.469

9.  Purification, cloning, and cofactor independence of glutamate racemase from Lactobacillus.

Authors:  K A Gallo; J R Knowles
Journal:  Biochemistry       Date:  1993-04-20       Impact factor: 3.162

10.  Cloning and heterologous expression of a novel arylmalonate decarboxylase gene from Alcaligenes bronchisepticus KU 1201.

Authors:  K Miyamoto; H Ohta
Journal:  Appl Microbiol Biotechnol       Date:  1992-11       Impact factor: 4.813

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  1 in total

Review 1.  Enantioselective protonation.

Authors:  Justin T Mohr; Allen Y Hong; Brian M Stoltz
Journal:  Nat Chem       Date:  2009-08       Impact factor: 24.427

  1 in total

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