Literature DB >> 15576788

Gene ytkD of Bacillus subtilis encodes an atypical nucleoside triphosphatase member of the Nudix hydrolase superfamily.

Wenlian Xu1, Candice R Jones, Christopher A Dunn, Maurice J Bessman.   

Abstract

Gene ytkD of Bacillus subtilis, a member of the Nudix hydrolase superfamily, has been cloned and expressed in Escherichia coli. The purified protein has been characterized as a nucleoside triphosphatase active on all of the canonical ribo- and deoxyribonucleoside triphosphates. Whereas all other nucleoside triphosphatase members of the superfamily release inorganic pyrophosphate and the cognate nucleoside monophosphate, YtkD hydrolyses nucleoside triphosphates in a stepwise fashion through the diphosphate to the monophosphate, releasing two molecules of inorganic orthophosphate. Contrary to a previous report, our enzymological and genetic studies indicate that ytkD is not an orthologue of E. coli mutT.

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Year:  2004        PMID: 15576788      PMCID: PMC532436          DOI: 10.1128/JB.186.24.8380-8384.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  20 in total

1.  The role of polyamines in the neutralization of bacteriophage deoxyribonucleic acid.

Authors:  B N AMES; D T DUBIN
Journal:  J Biol Chem       Date:  1960-03       Impact factor: 5.157

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

3.  Studies on the ADP-ribose pyrophosphatase subfamily of the nudix hydrolases and tentative identification of trgB, a gene associated with tellurite resistance.

Authors:  C A Dunn; S F O'Handley; D N Frick; M J Bessman
Journal:  J Biol Chem       Date:  1999-11-05       Impact factor: 5.157

4.  Biochemistry of deoxyribonucleic acid-defective amber mutants of bacteriophage T4. 3. Nucleotide pools.

Authors:  C K Mathews
Journal:  J Biol Chem       Date:  1972-11-25       Impact factor: 5.157

5.  Orf135 from Escherichia coli Is a Nudix hydrolase specific for CTP, dCTP, and 5-methyl-dCTP.

Authors:  S F O'Handley; C A Dunn; M J Bessman
Journal:  J Biol Chem       Date:  2000-10-26       Impact factor: 5.157

6.  The pur7 gene from the puromycin biosynthetic pur cluster of Streptomyces alboniger encodes a nudix hydrolase.

Authors:  J C Espinosa; J A Tercero; M A Rubio; A Jiménez
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

7.  The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Authors:  F Kunst; N Ogasawara; I Moszer; A M Albertini; G Alloni; V Azevedo; M G Bertero; P Bessières; A Bolotin; S Borchert; R Borriss; L Boursier; A Brans; M Braun; S C Brignell; S Bron; S Brouillet; C V Bruschi; B Caldwell; V Capuano; N M Carter; S K Choi; J J Cordani; I F Connerton; N J Cummings; R A Daniel; F Denziot; K M Devine; A Düsterhöft; S D Ehrlich; P T Emmerson; K D Entian; J Errington; C Fabret; E Ferrari; D Foulger; C Fritz; M Fujita; Y Fujita; S Fuma; A Galizzi; N Galleron; S Y Ghim; P Glaser; A Goffeau; E J Golightly; G Grandi; G Guiseppi; B J Guy; K Haga; J Haiech; C R Harwood; A Hènaut; H Hilbert; S Holsappel; S Hosono; M F Hullo; M Itaya; L Jones; B Joris; D Karamata; Y Kasahara; M Klaerr-Blanchard; C Klein; Y Kobayashi; P Koetter; G Koningstein; S Krogh; M Kumano; K Kurita; A Lapidus; S Lardinois; J Lauber; V Lazarevic; S M Lee; A Levine; H Liu; S Masuda; C Mauël; C Médigue; N Medina; R P Mellado; M Mizuno; D Moestl; S Nakai; M Noback; D Noone; M O'Reilly; K Ogawa; A Ogiwara; B Oudega; S H Park; V Parro; T M Pohl; D Portelle; S Porwollik; A M Prescott; E Presecan; P Pujic; B Purnelle; G Rapoport; M Rey; S Reynolds; M Rieger; C Rivolta; E Rocha; B Roche; M Rose; Y Sadaie; T Sato; E Scanlan; S Schleich; R Schroeter; F Scoffone; J Sekiguchi; A Sekowska; S J Seror; P Serror; B S Shin; B Soldo; A Sorokin; E Tacconi; T Takagi; H Takahashi; K Takemaru; M Takeuchi; A Tamakoshi; T Tanaka; P Terpstra; A Togoni; V Tosato; S Uchiyama; M Vandebol; F Vannier; A Vassarotti; A Viari; R Wambutt; H Wedler; T Weitzenegger; P Winters; A Wipat; H Yamamoto; K Yamane; K Yasumoto; K Yata; K Yoshida; H F Yoshikawa; E Zumstein; H Yoshikawa; A Danchin
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

8.  A new subfamily of the Nudix hydrolase superfamily active on 5-methyl-UTP (ribo-TTP) and UTP.

Authors:  WenLian Xu; JianYing Shen; Christopher A Dunn; Maurice J Bessman
Journal:  J Biol Chem       Date:  2003-07-18       Impact factor: 5.157

9.  The ytkD (mutTA) gene of Bacillus subtilis encodes a functional antimutator 8-Oxo-(dGTP/GTP)ase and is under dual control of sigma A and sigma F RNA polymerases.

Authors:  Martha I Ramírez; Francisco X Castellanos-Juárez; Ronald E Yasbin; Mario Pedraza-Reyes
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

10.  The 26 Nudix hydrolases of Bacillus cereus, a close relative of Bacillus anthracis.

Authors:  WenLian Xu; Christopher A Dunn; Candice R Jones; Gehaan D'Souza; Maurice J Bessman
Journal:  J Biol Chem       Date:  2004-04-01       Impact factor: 5.157

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  15 in total

1.  Analysis of Arabidopsis growth factor gene 1 (GFG1) encoding a nudix hydrolase during oxidative signaling.

Authors:  Niranjani Jambunathan; Ramamurthy Mahalingam
Journal:  Planta       Date:  2005-12-03       Impact factor: 4.116

2.  Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base.

Authors:  Teruya Nakamura; Sachiko Meshitsuka; Seiju Kitagawa; Nanase Abe; Junichi Yamada; Tetsuya Ishino; Hiroaki Nakano; Teruhisa Tsuzuki; Takefumi Doi; Yuji Kobayashi; Satoshi Fujii; Mutsuo Sekiguchi; Yuriko Yamagata
Journal:  J Biol Chem       Date:  2009-10-28       Impact factor: 5.157

3.  YvcI from Bacillus subtilis has in vitro RNA pyrophosphohydrolase activity.

Authors:  Jens Frindert; Masroor Ahmad Kahloon; Yaqing Zhang; Yasar Luqman Ahmed; Irmgard Sinning; Andres Jäschke
Journal:  J Biol Chem       Date:  2019-11-18       Impact factor: 5.157

4.  An RNA pyrophosphohydrolase triggers 5'-exonucleolytic degradation of mRNA in Bacillus subtilis.

Authors:  Jamie Richards; Quansheng Liu; Olivier Pellegrini; Helena Celesnik; Shiyi Yao; David H Bechhofer; Ciarán Condon; Joel G Belasco
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 5.  DNA repair and genome maintenance in Bacillus subtilis.

Authors:  Justin S Lenhart; Jeremy W Schroeder; Brian W Walsh; Lyle A Simmons
Journal:  Microbiol Mol Biol Rev       Date:  2012-09       Impact factor: 11.056

6.  The evolution of function within the Nudix homology clan.

Authors:  John R Srouji; Anting Xu; Annsea Park; Jack F Kirsch; Steven E Brenner
Journal:  Proteins       Date:  2017-03-16

7.  NUDT expression is predictive of prognosis in patients with clear cell renal cell carcinoma.

Authors:  Yue Wang; Fangning Wan; Kun Chang; Xiaolin Lu; Bo Dai; Dingwei Ye
Journal:  Oncol Lett       Date:  2017-09-18       Impact factor: 2.967

8.  Functional and structural characterization of DR_0079 from Deinococcus radiodurans, a novel Nudix hydrolase with a preference for cytosine (deoxy)ribonucleoside 5'-Di- and triphosphates.

Authors:  Garry W Buchko; Olga Litvinova; Howard Robinson; Alexander F Yakunin; Michael A Kennedy
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

9.  Substrate ambiguity among the nudix hydrolases: biologically significant, evolutionary remnant, or both?

Authors:  Alexander G McLennan
Journal:  Cell Mol Life Sci       Date:  2012-11-27       Impact factor: 9.261

10.  MutT from the fish pathogen Aliivibrio salmonicida is a cold-active nucleotide-pool sanitization enzyme with unexpectedly high thermostability.

Authors:  Kjersti Lian; Hanna-Kirsti S Leiros; Elin Moe
Journal:  FEBS Open Bio       Date:  2015-02-03       Impact factor: 2.693

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