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Literature DB >> 15572764

Interactive electron-density map interpretation: from INTER to O.

Abstract

A short review of the author's computer-graphics developments since 1976 is presented. Some of the major developments in these programs are reviewed and a description is provided of some of the more recent tools that can be used for electron-density map interpretation. These tools include a secondary-structure template-building system that works in conjunction with a new sequence-decoration system.

Mesh：

Year: 2004 PMID： 15572764 DOI： 10.1107/S0907444904023509

Source DB: PubMed Journal: Acta Crystallogr D Biol Crystallogr ISSN： 0907-4449

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Cited

41 in total

1. The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

Authors: D Jeffrey Bush; Olga Kirillova; Shawn A Clark; Omar Davulcu; Felcy Fabiola; Qing Xie; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal: J Biol Chem Date: 2011-01-06 Impact factor: 5.157

2. Progress in protein crystallography.

Authors: Zbigniew Dauter; Alexander Wlodawer
Journal: Protein Pept Lett Date: 2016 Impact factor: 1.890

3. Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

Authors: Alina Castell; Patrik Johansson; Torsten Unge; T Alwyn Jones; Kristina Bäckbro
Journal: Protein Sci Date: 2005-07 Impact factor: 6.725

10. Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics.

Authors: Narendra Narayana; Michael A Weiss
Journal: J Mol Biol Date: 2008-10-22 Impact factor: 5.469

Interactive electron-density map interpretation: from INTER to O.

1. The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

2. Progress in protein crystallography.

3. Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

4. Helix-packing motifs in membrane proteins.

5. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods.

6. Molecular insights into the binding of coenzyme F420 to the conserved protein Rv1155 from Mycobacterium tuberculosis.

7. Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation.

8. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.

9. Structure of the Q67H mutant of R67 dihydrofolate reductase-NADP+ complex reveals a novel cofactor binding mode.

10. Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics.