Literature DB >> 26732246

Progress in protein crystallography.

Zbigniew Dauter1, Alexander Wlodawer.   

Abstract

Macromolecular crystallography evolved enormously from the pioneering days, when structures were solved by "wizards" performing all complicated procedures almost by hand. In the current situation crystal structures of large systems can be often solved very effectively by various powerful automatic programs in days or hours, or even minutes. Such progress is to a large extent coupled to the advances in many other fields, such as genetic engineering, computer technology, availability of synchrotron beam lines and many other techniques, creating the highly interdisciplinary science of macromolecular crystallography. Due to this unprecedented success crystallography is often treated as one of the analytical methods and practiced by researchers interested in structures of macromolecules, but not highly competent in the procedures involved in the process of structure determination. One should therefore take into account that the contemporary, highly automatic systems can produce results almost without human intervention, but the resulting structures must be carefully checked and validated before their release into the public domain.

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Year:  2016        PMID: 26732246      PMCID: PMC6287266          DOI: 10.2174/0929866523666160106153524

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  100 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Data processing.

Authors:  M G Rossmann; C G van Beek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

4.  Escape from lysosomes.

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Journal:  Nat New Biol       Date:  1971-10-20

5.  Optical matching of physical models and electron density maps: early developments.

Authors:  F M Richards
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

Review 6.  Enhancing the solubility of recombinant proteins in Escherichia coli by using hexahistidine-tagged maltose-binding protein as a fusion partner.

Authors:  Ping Sun; Joseph E Tropea; David S Waugh
Journal:  Methods Mol Biol       Date:  2011

Review 7.  Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2013-09-18       Impact factor: 5.542

8.  phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta.

Authors:  Thomas C Terwilliger; Frank Dimaio; Randy J Read; David Baker; Gábor Bunkóczi; Paul D Adams; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nathaniel Echols
Journal:  J Struct Funct Genomics       Date:  2012-03-15

Review 9.  Serial femtosecond crystallography: the first five years.

Authors:  Ilme Schlichting
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  7 in total

Review 1.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

2.  Making sense of SFX data: standards for data and structure validation for a non-standard experiment that has come of age.

Authors:  Clyde A Smith
Journal:  IUCrJ       Date:  2021-06-30       Impact factor: 4.769

Review 3.  The Role of Molecular Flexibility in Antigen Presentation and T Cell Receptor-Mediated Signaling.

Authors:  Kannan Natarajan; Jiansheng Jiang; Nathan A May; Michael G Mage; Lisa F Boyd; Andrew C McShan; Nikolaos G Sgourakis; Ad Bax; David H Margulies
Journal:  Front Immunol       Date:  2018-07-17       Impact factor: 7.561

Review 4.  Molecular Docking: Shifting Paradigms in Drug Discovery.

Authors:  Luca Pinzi; Giulio Rastelli
Journal:  Int J Mol Sci       Date:  2019-09-04       Impact factor: 5.923

5.  N1-Benzofused Modification of Fluoroquinolones Reduces Activity Against Gram-Negative Bacteria.

Authors:  Mark Laws; Charlotte Hind; Andrea Favaron; Shirin Jamshidi; Bonnie Evans; Melanie Clifford; J Mark Sutton; Khondaker Miraz Rahman
Journal:  ACS Omega       Date:  2020-05-18

6.  Paradoxical effects on voltage-gated Na+ conductance in adrenal chromaffin cells by twin vs single high intensity nanosecond electric pulses.

Authors:  Lisha Yang; Sophia Pierce; Indira Chatterjee; Gale L Craviso; Normand Leblanc
Journal:  PLoS One       Date:  2020-06-09       Impact factor: 3.240

7.  In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices.

Authors:  Yichen Zhang; Shu Wang; Zongchao Jia
Journal:  Int J Mol Sci       Date:  2020-01-02       Impact factor: 5.923

  7 in total

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