Literature DB >> 25644473

Molecular insights into the binding of coenzyme F420 to the conserved protein Rv1155 from Mycobacterium tuberculosis.

Ellene H Mashalidis1, Apostolos G Gittis, Aurelie Tomczak, Chris Abell, Clifton E Barry, David N Garboczi.   

Abstract

Coenzyme F420 is a deazaflavin hydride carrier with a lower reduction potential than most flavins. In Mycobacterium tuberculosis (Mtb), F420 plays an important role in activating PA-824, an antituberculosis drug currently used in clinical trials. Although F420 is important to Mtb redox metabolism, little is known about the enzymes that bind F420 and the reactions that they catalyze. We have identified a novel F420 -binding protein, Rv1155, which is annotated in the Mtb genome sequence as a putative flavin mononucleotide (FMN)-binding protein. Using biophysical techniques, we have demonstrated that instead of binding FMN or other flavins, Rv1155 binds coenzyme F420 . The crystal structure of the complex of Rv1155 and F420 reveals one F420 molecule bound to each monomer of the Rv1155 dimer. Structural, biophysical, and bioinformatic analyses of the Rv1155-F420 complex provide clues about its role in the bacterium.
© 2015 The Protein Society.

Entities:  

Keywords:  Mycobacterium tuberculosis; Rv1155; coenzyme F420; conserved hypothetical protein

Mesh:

Substances:

Year:  2015        PMID: 25644473      PMCID: PMC4420522          DOI: 10.1002/pro.2645

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  49 in total

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Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

Review 2.  The challenge of new drug discovery for tuberculosis.

Authors:  Anil Koul; Eric Arnoult; Nacer Lounis; Jerome Guillemont; Koen Andries
Journal:  Nature       Date:  2011-01-27       Impact factor: 49.962

3.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

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Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

4.  Crystal structure of the conserved hypothetical protein Rv1155 from Mycobacterium tuberculosis.

Authors:  Stéphane Canaan; Gerlind Sulzenbacher; Véronique Roig-Zamboni; Loréna Scappuccini-Calvo; Frédéric Frassinetti; Damien Maurin; Christian Cambillau; Yves Bourne
Journal:  FEBS Lett       Date:  2005-01-03       Impact factor: 4.124

5.  A three-stage biophysical screening cascade for fragment-based drug discovery.

Authors:  Ellene H Mashalidis; Paweł Śledź; Steffen Lang; Chris Abell
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

6.  A small-molecule nitroimidazopyran drug candidate for the treatment of tuberculosis.

Authors:  C K Stover; P Warrener; D R VanDevanter; D R Sherman; T M Arain; M H Langhorne; S W Anderson; J A Towell; Y Yuan; D N McMurray; B N Kreiswirth; C E Barry; W R Baker
Journal:  Nature       Date:  2000-06-22       Impact factor: 49.962

Review 7.  Scaling up interventions to achieve global tuberculosis control: progress and new developments.

Authors:  Mario Raviglione; Ben Marais; Katherine Floyd; Knut Lönnroth; Haileyesus Getahun; Giovanni B Migliori; Anthony D Harries; Paul Nunn; Christian Lienhardt; Steve Graham; Jeremiah Chakaya; Karin Weyer; Stewart Cole; Stefan H E Kaufmann; Alimuddin Zumla
Journal:  Lancet       Date:  2012-05-19       Impact factor: 79.321

8.  Rv2607 from Mycobacterium tuberculosis is a pyridoxine 5'-phosphate oxidase with unusual substrate specificity.

Authors:  Ellene H Mashalidis; Tathagata Mukherjee; Paweł Sledź; Dijana Matak-Vinković; Helena Boshoff; Chris Abell; Clifton E Barry
Journal:  PLoS One       Date:  2011-11-14       Impact factor: 3.240

9.  Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.

Authors:  Susan E Cellitti; Jennifer Shaffer; David H Jones; Tathagata Mukherjee; Meera Gurumurthy; Badry Bursulaya; Helena I Boshoff; Inhee Choi; Amit Nayyar; Yong Sok Lee; Joseph Cherian; Pornwaratt Niyomrattanakit; Thomas Dick; Ujjini H Manjunatha; Clifton E Barry; Glen Spraggon; Bernhard H Geierstanger
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

10.  STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Authors:  Andrea Franceschini; Damian Szklarczyk; Sune Frankild; Michael Kuhn; Milan Simonovic; Alexander Roth; Jianyi Lin; Pablo Minguez; Peer Bork; Christian von Mering; Lars J Jensen
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

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  10 in total

1.  Elongation of the Poly-γ-glutamate Tail of F420 Requires Both Domains of the F420:γ-Glutamyl Ligase (FbiB) of Mycobacterium tuberculosis.

Authors:  Ghader Bashiri; Aisyah M Rehan; Sreevalsan Sreebhavan; Heather M Baker; Edward N Baker; Christopher J Squire
Journal:  J Biol Chem       Date:  2016-02-09       Impact factor: 5.157

2.  FAD-sequestering proteins protect mycobacteria against hypoxic and oxidative stress.

Authors:  Liam K Harold; James Antoney; F Hafna Ahmed; Kiel Hards; Paul D Carr; Trevor Rapson; Chris Greening; Colin J Jackson; Gregory M Cook
Journal:  J Biol Chem       Date:  2018-12-19       Impact factor: 5.157

3.  Biosynthesis of the Thiopeptins and Identification of an F420H2-Dependent Dehydropiperidine Reductase.

Authors:  Hiro Ichikawa; Ghader Bashiri; Wendy L Kelly
Journal:  J Am Chem Soc       Date:  2018-08-17       Impact factor: 15.419

4.  Rv2074 is a novel F420 H2 -dependent biliverdin reductase in Mycobacterium tuberculosis.

Authors:  F Hafna Ahmed; A Elaaf Mohamed; Paul D Carr; Brendon M Lee; Karmen Condic-Jurkic; Megan L O'Mara; Colin J Jackson
Journal:  Protein Sci       Date:  2016-07-17       Impact factor: 6.725

Review 5.  Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions.

Authors:  Chris Greening; F Hafna Ahmed; A Elaaf Mohamed; Brendon M Lee; Gunjan Pandey; Andrew C Warden; Colin Scott; John G Oakeshott; Matthew C Taylor; Colin J Jackson
Journal:  Microbiol Mol Biol Rev       Date:  2016-04-27       Impact factor: 11.056

6.  Cofactor F420: an expanded view of its distribution, biosynthesis and roles in bacteria and archaea.

Authors:  Rhys Grinter; Chris Greening
Journal:  FEMS Microbiol Rev       Date:  2021-09-08       Impact factor: 16.408

7.  Experimental Evidence for a Revision in the Annotation of Putative Pyridoxamine 5'-Phosphate Oxidases P(N/M)P from Fungi.

Authors:  Tatiana Domitrovic; Diana P Raymundo; Tiago Fernandes da Silva; Fernando L Palhano
Journal:  PLoS One       Date:  2015-09-01       Impact factor: 3.240

8.  Recombinant Aflatoxin-Degrading F420H2-Dependent Reductase from Mycobacterium smegmatis Protects Mammalian Cells from Aflatoxin Toxicity.

Authors:  Che-Hsing Li; Wei-Yang Li; I-Ning Hsu; Yung-Yu Liao; Chi-Ya Yang; Matthew C Taylor; Yu-Fan Liu; Wei-Hao Huang; Hsiang-Hua Chang; Ho-Lo Huang; Shao-Chi Lo; Ting-Yu Lin; Wei-Che Sun; Ya-Yi Chuang; Yu-Chieh Yang; Ru-Huei Fu; Rong-Tzong Tsai
Journal:  Toxins (Basel)       Date:  2019-05-08       Impact factor: 4.546

9.  Cofactor Tail Length Modulates Catalysis of Bacterial F420-Dependent Oxidoreductases.

Authors:  Blair Ney; Carlo R Carere; Richard Sparling; Thanavit Jirapanjawat; Matthew B Stott; Colin J Jackson; John G Oakeshott; Andrew C Warden; Chris Greening
Journal:  Front Microbiol       Date:  2017-09-27       Impact factor: 5.640

10.  On the diversity of F420 -dependent oxidoreductases: A sequence- and structure-based classification.

Authors:  María Laura Mascotti; Maximiliano Juri Ayub; Marco W Fraaije
Journal:  Proteins       Date:  2021-07-16
  10 in total

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