Literature DB >> 15987908

Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

Alina Castell1, Patrik Johansson, Torsten Unge, T Alwyn Jones, Kristina Bäckbro.   

Abstract

The Mycobacterium tuberculosis genome contains about 4000 genes, of which approximately a third code for proteins of unknown function or are classified as conserved hypothetical proteins. We have determined the three-dimensional structure of one of these, the rv0216 gene product, which has been shown to be essential for M. tuberculosis growth in vivo. The structure exhibits the greatest similarity to bacterial and eukaryotic hydratases that catalyse the R-specific hydration of 2-enoyl coenzyme A. However, only part of the catalytic machinery is conserved in Rv0216 and it showed no activity for the substrate crotonyl-CoA. The structure of Rv0216 allows us to assign new functional annotations to a family of seven other M. tuberculosis proteins, a number if which are essential for bacterial survival during infection and growth.

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Year:  2005        PMID: 15987908      PMCID: PMC2253346          DOI: 10.1110/ps.051442305

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  42 in total

1.  The Protein Data Bank.

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Enhanced genome annotation using structural profiles in the program 3D-PSSM.

Authors:  L A Kelley; R M MacCallum; M J Sternberg
Journal:  J Mol Biol       Date:  2000-06-02       Impact factor: 5.469

3.  RSPS version 4.0: a semi-interactive vector-search program for solving heavy-atom derivatives.

Authors:  S D Knight
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-01

Review 4.  Comparative mycobacterial genomics as a tool for drug target and antigen discovery.

Authors:  S T Cole
Journal:  Eur Respir J Suppl       Date:  2002-07

5.  Massive gene decay in the leprosy bacillus.

Authors:  S T Cole; K Eiglmeier; J Parkhill; K D James; N R Thomson; P R Wheeler; N Honoré; T Garnier; C Churcher; D Harris; K Mungall; D Basham; D Brown; T Chillingworth; R Connor; R M Davies; K Devlin; S Duthoy; T Feltwell; A Fraser; N Hamlin; S Holroyd; T Hornsby; K Jagels; C Lacroix; J Maclean; S Moule; L Murphy; K Oliver; M A Quail; M A Rajandream; K M Rutherford; S Rutter; K Seeger; S Simon; M Simmonds; J Skelton; R Squares; S Squares; K Stevens; K Taylor; S Whitehead; J R Woodward; B G Barrell
Journal:  Nature       Date:  2001-02-22       Impact factor: 49.962

6.  Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme.

Authors:  J Li; U Derewenda; Z Dauter; S Smith; Z S Derewenda
Journal:  Nat Struct Biol       Date:  2000-07

7.  X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.

Authors:  James B Thoden; Hazel M Holden; Zhihao Zhuang; Debra Dunaway-Mariano
Journal:  J Biol Chem       Date:  2002-05-07       Impact factor: 5.157

8.  Human peroxisomal multifunctional enzyme type 2. Site-directed mutagenesis studies show the importance of two protic residues for 2-enoyl-CoA hydratase 2 activity.

Authors:  Y M Qin; A M Haapalainen; S H Kilpeläinen; M S Marttila; M K Koski; T Glumoff; D K Novikov; J K Hiltunen
Journal:  J Biol Chem       Date:  2000-02-18       Impact factor: 5.157

9.  Structural mechanism of enoyl-CoA hydratase: three atoms from a single water are added in either an E1cb stepwise or concerted fashion.

Authors:  Brian J Bahnson; Vernon E Anderson; Gregory A Petsko
Journal:  Biochemistry       Date:  2002-02-26       Impact factor: 3.162

10.  Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.

Authors:  Jean-Christophe Camus; Melinda J Pryor; Claudine Médigue; Stewart T Cole
Journal:  Microbiology       Date:  2002-10       Impact factor: 2.777

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  13 in total

Review 1.  Targeting the formation of the cell wall core of M. tuberculosis.

Authors:  Clifton E Barry; Dean C Crick; Michael R McNeil
Journal:  Infect Disord Drug Targets       Date:  2007-06

2.  Structure and function of Rv0130, a conserved hypothetical protein from Mycobacterium tuberculosis.

Authors:  Patrik Johansson; Alina Castell; T Alwyn Jones; Kristina Bäckbro
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

3.  Revisiting the assignment of Rv0241c to fatty acid synthase type II of Mycobacterium tuberculosis.

Authors:  Emmanuelle Sacco; Nawel Slama; Kristina Bäckbro; Tanya Parish; Françoise Laval; Mamadou Daffé; Nathalie Eynard; Annaik Quémard
Journal:  J Bacteriol       Date:  2010-05-28       Impact factor: 3.490

Review 4.  Active site comparisons and catalytic mechanisms of the hot dog superfamily.

Authors:  Jason W Labonte; Craig A Townsend
Journal:  Chem Rev       Date:  2012-12-03       Impact factor: 60.622

5.  The missing piece of the type II fatty acid synthase system from Mycobacterium tuberculosis.

Authors:  Emmanuelle Sacco; Adrian Suarez Covarrubias; Helen M O'Hare; Paul Carroll; Nathalie Eynard; T Alwyn Jones; Tanya Parish; Mamadou Daffé; Kristina Bäckbro; Annaïk Quémard
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

6.  Heterologous expression of mycobacterial proteins in Saccharomyces cerevisiae reveals two physiologically functional 3-hydroxyacyl-thioester dehydratases, HtdX and HtdY, in addition to HadABC and HtdZ.

Authors:  Aner Gurvitz; J Kalervo Hiltunen; Alexander J Kastaniotis
Journal:  J Bacteriol       Date:  2009-01-09       Impact factor: 3.490

Review 7.  Structural genomics as an approach towards understanding the biology of tuberculosis.

Authors:  Edward N Baker
Journal:  J Struct Funct Genomics       Date:  2007-08-01

8.  Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv.

Authors:  Rupam Biswas; Debajyoti Dutta; Amit Kumar Das
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

9.  Molecular basis for the inhibition of β-hydroxyacyl-ACP dehydratase HadAB complex from Mycobacterium tuberculosis by flavonoid inhibitors.

Authors:  Yu Dong; Xiaodi Qiu; Neil Shaw; Yueyang Xu; Yuna Sun; Xuemei Li; Jun Li; Zihe Rao
Journal:  Protein Cell       Date:  2015-06-17       Impact factor: 14.870

10.  Analysis of proteins with the 'hot dog' fold: prediction of function and identification of catalytic residues of hypothetical proteins.

Authors:  Lakshmi S Pidugu; Koustav Maity; Karthikeyan Ramaswamy; Namita Surolia; Kaza Suguna
Journal:  BMC Struct Biol       Date:  2009-05-28
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