Literature DB >> 15525706

RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli.

Katharina Semrad1, Rachel Green, Renée Schroeder.   

Abstract

The ribosome is a highly dynamic ribonucleoprotein machine. During assembly and during translation the ribosomal RNAs must routinely be prevented from falling into kinetic folding traps. Stable occupation of these trapped states may be prevented by proteins with RNA chaperone activity. Here, ribosomal proteins from the large (50S) ribosome subunit of Escherichia coli were tested for RNA chaperone activity in an in vitro trans splicing assay. Nearly a third of the 34 large ribosomal subunit proteins displayed RNA chaperone activity. We discuss a possible role of this function during ribosome assembly and during translation.

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Year:  2004        PMID: 15525706      PMCID: PMC1370674          DOI: 10.1261/rna.7121704

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  36 in total

1.  Identification of an RNA-protein bridge spanning the ribosomal subunit interface.

Authors:  G M Culver; J H Cate; G Z Yusupova; M M Yusupov; H F Noller
Journal:  Science       Date:  1999-09-24       Impact factor: 47.728

2.  Assaying RNA chaperone activity in vivo using a novel RNA folding trap.

Authors:  E Clodi; K Semrad; R Schroeder
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

3.  Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation.

Authors:  H Stark; M V Rodnina; H J Wieden; M van Heel; W Wintermeyer
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

4.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

5.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

6.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

7.  GTPase activation of elongation factors Tu and G on the ribosome.

Authors:  Dagmar Mohr; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Biochemistry       Date:  2002-10-15       Impact factor: 3.162

8.  RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo.

Authors:  Christina Waldsich; Rupert Grossberger; Renée Schroeder
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

9.  Crystal structure of the RNA binding ribosomal protein L1 from Thermus thermophilus.

Authors:  S Nikonov; N Nevskaya; I Eliseikina; N Fomenkova; A Nikulin; N Ossina; M Garber; B H Jonsson; C Briand; S Al-Karadaghi; A Svensson; A Aevarsson; A Liljas
Journal:  EMBO J       Date:  1996-03-15       Impact factor: 11.598

10.  Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins.

Authors:  G M Culver; H F Noller
Journal:  RNA       Date:  1999-06       Impact factor: 4.942

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  35 in total

1.  Probing ribosomal protein-RNA interactions with an external force.

Authors:  Pierre Mangeol; Thierry Bizebard; Claude Chiaruttini; Marc Dreyfus; Mathias Springer; Ulrich Bockelmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

2.  RNA chaperone activity of protein components of human Ro RNPs.

Authors:  Aurélia Belisova; Katharina Semrad; Oliver Mayer; Grazia Kocian; Elisabeth Waigmann; Renée Schroeder; Günter Steiner
Journal:  RNA       Date:  2005-05-31       Impact factor: 4.942

Review 3.  RNA misfolding and the action of chaperones.

Authors:  Rick Russell
Journal:  Front Biosci       Date:  2008-01-01

4.  Dissecting RNA chaperone activity.

Authors:  Lukas Rajkowitsch; Renée Schroeder
Journal:  RNA       Date:  2007-09-27       Impact factor: 4.942

5.  Kinetic and thermodynamic framework for P4-P6 RNA reveals tertiary motif modularity and modulation of the folding preferred pathway.

Authors:  Namita Bisaria; Max Greenfeld; Charles Limouse; Dmitri S Pavlichin; Hideo Mabuchi; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-04       Impact factor: 11.205

6.  Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.

Authors:  Ramachandran Rakesh; Agnel Praveen Joseph; Ramachandra M Bhaskara; Narayanaswamy Srinivasan
Journal:  RNA Biol       Date:  2016-08-11       Impact factor: 4.652

7.  Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18.

Authors:  Alexandre Smirnov; Nina Entelis; Robert P Martin; Ivan Tarassov
Journal:  Genes Dev       Date:  2011-06-15       Impact factor: 11.361

8.  Functional characterization of ribosomal protein L15 from Saccharomyces cerevisiae.

Authors:  Ivailo Simoff; Hossein Moradi; Odd Nygård
Journal:  Curr Genet       Date:  2009-01-28       Impact factor: 3.886

9.  mRNA secondary structures fold sequentially but exchange rapidly in vivo.

Authors:  Elisabeth M Mahen; Peter Y Watson; Joseph W Cottrell; Martha J Fedor
Journal:  PLoS Biol       Date:  2010-02-09       Impact factor: 8.029

Review 10.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

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