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Literature DB >> 15510221

Genomic specification and epigenetic regulation of eukaryotic DNA replication origins.

Abstract

Identification of DNA replication origins (ORIs) at a genome-wide level in eukaryotes has proved to be difficult due to the high degree of degeneracy of their sequences. Recent structural and functional approaches, however, have circumvented this limitation and have provided reliable predictions of their genomic distribution in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe, and they have also significantly increased the number of characterized ORIs in animals. This article reviews recent evidence on how ORIs are specified and maintained in these systems and on their regulation and sensitivity to epigenetic signals. It also discusses the possible additional involvement of ORIs in processes other than DNA replication.

Entities: Species

Mesh：

Substances：
DNA, Fungal

Year: 2004 PMID： 15510221 PMCID： PMC526466 DOI： 10.1038/sj.emboj.7600450

Source DB: PubMed Journal: EMBO J ISSN： 0261-4189 Impact factor: 11.598

59 in total

Review 1. The methyl-CpG binding domain and the evolving role of DNA methylation in animals.

Authors: Brian Hendrich; Susan Tweedie
Journal: Trends Genet Date: 2003-05 Impact factor: 11.639

Review 2. Epigenomic replication: linking epigenetics to DNA replication.

Authors: Adrian J McNairn; David M Gilbert
Journal: Bioessays Date: 2003-07 Impact factor: 4.345

Review 3. Replication origins: why do we need so many?

Authors: Anja-Katrin Bielinsky
Journal: Cell Cycle Date: 2003 Jul-Aug Impact factor: 4.534

4. Vertebrate HoxB gene expression requires DNA replication.

Authors: Daniel Fisher; Marcel Méchali
Journal: EMBO J Date: 2003-07-15 Impact factor: 11.598

Review 5. The 'ORC cycle': a novel pathway for regulating eukaryotic DNA replication.

Authors: Melvin L DePamphilis
Journal: Gene Date: 2003-05-22 Impact factor: 3.688

6. Sequence-independent DNA binding and replication initiation by the human origin recognition complex.

Authors: Sanjay Vashee; Christin Cvetic; Wenyan Lu; Pamela Simancek; Thomas J Kelly; Johannes C Walter
Journal: Genes Dev Date: 2003-08-01 Impact factor: 11.361

Review 7. The structure and function of yeast ARS elements.

Authors: C S Newlon; J F Theis
Journal: Curr Opin Genet Dev Date: 1993-10 Impact factor: 5.578

8. Chromosome integrity in Saccharomyces cerevisiae: the interplay of DNA replication initiation factors, elongation factors, and origins.

Authors: Dongli Huang; Douglas Koshland
Journal: Genes Dev Date: 2003-07-15 Impact factor: 11.361

9. Evidence for preferential mismatch repair of lagging strand DNA replication errors in yeast.

Authors: Youri I Pavlov; Ibrahim M Mian; Thomas A Kunkel
Journal: Curr Biol Date: 2003-04-29 Impact factor: 10.834

10. Developmentally regulated usage of Physarum DNA replication origins.

Authors: Chrystelle Maric; Marianne Bénard; Gérard Pierron
Journal: EMBO Rep Date: 2003-05 Impact factor: 8.807

20 in total

1. Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.

Authors: Emilie Besnard; Amélie Babled; Laure Lapasset; Ollivier Milhavet; Hugues Parrinello; Christelle Dantec; Jean-Michel Marin; Jean-Marc Lemaitre
Journal: Nat Struct Mol Biol Date: 2012-07-01 Impact factor: 15.369

2. Genome-wide depletion of replication initiation events in highly transcribed regions.

Authors: Melvenia M Martin; Michael Ryan; RyangGuk Kim; Anna L Zakas; Haiqing Fu; Chii Mei Lin; William C Reinhold; Sean R Davis; Sven Bilke; Hongfang Liu; James H Doroshow; Mark A Reimers; Manuel S Valenzuela; Yves Pommier; Paul S Meltzer; Mirit I Aladjem
Journal: Genome Res Date: 2011-08-03 Impact factor: 9.043

Review 3. Initiation of DNA replication: functional and evolutionary aspects.

Authors: John A Bryant; Stephen J Aves
Journal: Ann Bot Date: 2011-04-20 Impact factor: 4.357

4. Defining components of the chromosomal origin of replication of the hyperthermophilic archaeon Pyrococcus furiosus needed for construction of a stable replicating shuttle vector.

Authors: Joel Farkas; Daehwan Chung; Megan DeBarry; Michael W W Adams; Janet Westpheling
Journal: Appl Environ Microbiol Date: 2011-07-22 Impact factor: 4.792

Review 5. The chromatin backdrop of DNA replication: lessons from genetics and genome-scale analyses.

Authors: Amy L Conner; Mirit I Aladjem
Journal: Biochim Biophys Acta Date: 2012-02-08

6. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette.

Authors: Sisi Li; Zhenlin Yang; Xuan Du; Rui Liu; Alex W Wilkinson; Or Gozani; Steven E Jacobsen; Dinshaw J Patel; Jiamu Du
Journal: Structure Date: 2016-02-11 Impact factor: 5.006

7. The Chinese hamster dihydrofolate reductase replication origin decision point follows activation of transcription and suppresses initiation of replication within transcription units.

Authors: Takayo Sasaki; Sunita Ramanathan; Yukiko Okuno; Chiharu Kumagai; Seemab S Shaikh; David M Gilbert
Journal: Mol Cell Biol Date: 2006-02 Impact factor: 4.272