Literature DB >> 15486087

Origin of icosahedral symmetry in viruses.

Roya Zandi1, David Reguera, Robijn F Bruinsma, William M Gelbart, Joseph Rudnick.   

Abstract

With few exceptions, the shells (capsids) of sphere-like viruses have the symmetry of an icosahedron and are composed of coat proteins (subunits) assembled in special motifs, the T-number structures. Although the synthesis of artificial protein cages is a rapidly developing area of materials science, the design criteria for self-assembled shells that can reproduce the remarkable properties of viral capsids are only beginning to be understood. We present here a minimal model for equilibrium capsid structure, introducing an explicit interaction between protein multimers (capsomers). Using Monte Carlo simulation we show that the model reproduces the main structures of viruses in vivo (T-number icosahedra) and important nonicosahedral structures (with octahedral and cubic symmetry) observed in vitro. Our model can also predict capsid strength and shed light on genome release mechanisms.

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Year:  2004        PMID: 15486087      PMCID: PMC524849          DOI: 10.1073/pnas.0405844101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  D M Salunke; D L Caspar; R L Garcea
Journal:  Biophys J       Date:  1989-11       Impact factor: 4.033

2.  A tiling approach to virus capsid assembly explaining a structural puzzle in virology.

Authors:  R Twarock
Journal:  J Theor Biol       Date:  2004-02-21       Impact factor: 2.691

3.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

4.  Viral self-assembly as a thermodynamic process.

Authors:  Robijn F Bruinsma; William M Gelbart; David Reguera; Joseph Rudnick; Roya Zandi
Journal:  Phys Rev Lett       Date:  2003-06-17       Impact factor: 9.161

5.  The observed form of coated vesicles and a mathematical covering problem.

Authors:  T Tarnai
Journal:  J Mol Biol       Date:  1991-04-05       Impact factor: 5.469

6.  Comparison of the native CCMV virion with in vitro assembled CCMV virions by cryoelectron microscopy and image reconstruction.

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Journal:  Virology       Date:  1998-04-25       Impact factor: 3.616

7.  Viruses and a mathematical problem.

Authors:  M Goldberg
Journal:  J Mol Biol       Date:  1967-03-14       Impact factor: 5.469

8.  Assembly of a spherical plant virus.

Authors:  K W Adolph; P J Butler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1976-11-30       Impact factor: 6.237

9.  Characterization of a conformational epitope on hepatitis B virus core antigen and quasiequivalent variations in antibody binding.

Authors:  J F Conway; N R Watts; D M Belnap; N Cheng; S J Stahl; P T Wingfield; A C Steven
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

10.  Assembly properties of the human immunodeficiency virus type 1 CA protein.

Authors:  Barbie K Ganser-Pornillos; Uta K von Schwedler; Kirsten M Stray; Christopher Aiken; Wesley I Sundquist
Journal:  J Virol       Date:  2004-03       Impact factor: 5.103

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  89 in total

1.  The structure of elongated viral capsids.

Authors:  Antoni Luque; David Reguera
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  The Robust Assembly of Small Symmetric Nanoshells.

Authors:  Jef Wagner; Roya Zandi
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

3.  Principles Governing the Self-Assembly of Coiled-Coil Protein Nanoparticles.

Authors:  Giuliana Indelicato; Newton Wahome; Philippe Ringler; Shirley A Müller; Mu-Ping Nieh; Peter Burkhard; Reidun Twarock
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

4.  Self-Assembly of an Alphavirus Core-like Particle Is Distinguished by Strong Intersubunit Association Energy and Structural Defects.

Authors:  Joseph Che-Yen Wang; Chao Chen; Vamseedhar Rayaprolu; Suchetana Mukhopadhyay; Adam Zlotnick
Journal:  ACS Nano       Date:  2015-08-21       Impact factor: 15.881

5.  A reaction landscape identifies the intermediates critical for self-assembly of virus capsids and other polyhedral structures.

Authors:  Dan Endres; Masaki Miyahara; Paul Moisant; Adam Zlotnick
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

6.  Viruses and the physics of soft condensed matter.

Authors:  Adam Zlotnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-25       Impact factor: 11.205

7.  Classical nucleation theory of virus capsids.

Authors:  Roya Zandi; Paul van der Schoot; David Reguera; Willem Kegel; Howard Reiss
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

8.  Mechanical deformation of spherical viruses with icosahedral symmetry.

Authors:  Gerard Adriaan Vliegenthart; Gerhard Gompper
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

9.  Mechanisms of size control and polymorphism in viral capsid assembly.

Authors:  Oren M Elrad; Michael F Hagan
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

10.  Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size.

Authors:  Yufang Hu; Roya Zandi; Adriana Anavitarte; Charles M Knobler; William M Gelbart
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

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