Literature DB >> 15505200

Viruses and the physics of soft condensed matter.

Adam Zlotnick1.   

Abstract

Mesh：

Year:  2004        PMID： 15505200      PMCID： PMC524855          DOI： 10.1073/pnas.0406935101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  21 in total

1.  Virus maturation involving large subunit rotations and local refolding.

Authors:  J F Conway; W R Wikoff; N Cheng; R L Duda; R W Hendrix; J E Johnson; A C Steven
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

Review 2.  How does your virus grow? Understanding and interfering with virus assembly.

Authors:  Adam Zlotnick; Stephen J Stray
Journal:  Trends Biotechnol       Date:  2003-12       Impact factor: 19.536

3.  A tiling approach to virus capsid assembly explaining a structural puzzle in virology.

Authors:  R Twarock
Journal:  J Theor Biol       Date:  2004-02-21       Impact factor: 2.691

Review 4.  Antivirals interacting with hepatitis B virus core protein and core mutations may misdirect capsid assembly in a similar fashion.

Authors:  Hans Jörg Hacker; Karl Deres; Maria Mildenberger; Claus H Schröder
Journal:  Biochem Pharmacol       Date:  2003-12-15       Impact factor: 5.858

5.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

6.  Viral self-assembly as a thermodynamic process.

Authors:  Robijn F Bruinsma; William M Gelbart; David Reguera; Joseph Rudnick; Roya Zandi
Journal:  Phys Rev Lett       Date:  2003-06-17       Impact factor: 9.161

7.  Structure of small viruses.

Authors:  F H CRICK; J D WATSON
Journal:  Nature       Date:  1956-03-10       Impact factor: 49.962

8.  In vitro papillomavirus capsid assembly analyzed by light scattering.

Authors:  Greg L Casini; David Graham; David Heine; Robert L Garcea; David T Wu
Journal:  Virology       Date:  2004-08-01       Impact factor: 3.616

9.  Penton release from P22 heat-expanded capsids suggests importance of stabilizing penton-hexon interactions during capsid maturation.

Authors:  Carolyn M Teschke; Amy McGough; Pamela A Thuman-Commike
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

10.  Zinc ions trigger conformational change and oligomerization of hepatitis B virus capsid protein.

Authors:  Stephen J Stray; Pablo Ceres; Adam Zlotnick
Journal:  Biochemistry       Date:  2004-08-10       Impact factor: 3.162
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  12 in total

1.  Validation of previous computer models and MD simulations of discoidal HDL by a recent crystal structure of apoA-I.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte; Saravana P Thirumuruganandham
Journal:  J Lipid Res       Date:  2012-07-08       Impact factor: 5.922

2.  Stochastic kinetics of viral capsid assembly based on detailed protein structures.

Authors:  Martin Hemberg; Sophia N Yaliraki; Mauricio Barahona
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

3.  "Sticky" and "promiscuous", the yin and yang of apolipoprotein A-I termini in discoidal high-density lipoproteins: a combined computational-experimental approach.

Authors:  Martin K Jones; Feifei Gu; Andrea Catte; Ling Li; Jere P Segrest
Journal:  Biochemistry       Date:  2011-03-04       Impact factor: 3.162

4.  MD simulations suggest important surface differences between reconstituted and circulating spherical HDL.

Authors:  Jere P Segrest; Martin K Jones; Andrea Catte
Journal:  J Lipid Res       Date:  2013-07-15       Impact factor: 5.922

Review 5.  Sequence conservation of apolipoprotein A-I affords novel insights into HDL structure-function.

Authors:  Denys Bashtovyy; Martin K Jones; G M Anantharamaiah; Jere P Segrest
Journal:  J Lipid Res       Date:  2010-12-14       Impact factor: 5.922

6.  VP4 protein from human rhinovirus 14 is released by pressure and locked in the capsid by the antiviral compound WIN.

Authors:  Rafael B Gonçalves; Ygara S Mendes; Marcia R Soares; Umesh Katpally; Thomas J Smith; Jerson L Silva; Andréa C Oliveira
Journal:  J Mol Biol       Date:  2006-11-11       Impact factor: 5.469

7.  The thermodynamics of virus capsid assembly.

Authors:  Sarah Katen; Adam Zlotnick
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

8.  Heparin binding induces conformational changes in Adeno-associated virus serotype 2.

Authors:  Hazel C Levy; Valorie D Bowman; Lakshmanan Govindasamy; Robert McKenna; Kevin Nash; Kenneth Warrington; Weijun Chen; Nicholas Muzyczka; Xiaodong Yan; Timothy S Baker; Mavis Agbandje-McKenna
Journal:  J Struct Biol       Date:  2008-12-13       Impact factor: 2.867

9.  Antimicrobial peptide capsids of de novo design.

Authors:  Emiliana De Santis; Hasan Alkassem; Baptiste Lamarre; Nilofar Faruqui; Angelo Bella; James E Noble; Nicola Micale; Santanu Ray; Jonathan R Burns; Alexander R Yon; Bart W Hoogenboom; Maxim G Ryadnov
Journal:  Nat Commun       Date:  2017-12-22       Impact factor: 14.919

10.  Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles.

Authors:  Olga Kononova; Joost Snijder; Yaroslav Kholodov; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Valeri Barsegov
Journal:  PLoS Comput Biol       Date:  2016-01-28       Impact factor: 4.475
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