Literature DB >> 15483415

In silico design of clinical trials: a method coming of age.

Gilles Clermont1, John Bartels, Rukmini Kumar, Greg Constantine, Yoram Vodovotz, Carson Chow.   

Abstract

OBJECTIVE: To determine the feasibility and potential usefulness of mathematical models in evaluating immunomodulatory strategies in clinical trials of severe sepsis.
DESIGN: Mathematical modeling of immunomodulation in simulated patients.
SETTING: Computer laboratory.
MEASUREMENTS AND MAIN RESULTS: We introduce and evaluate the concept of conducting a randomized clinical trial in silico based on simulated patients generated from a mechanistic mathematical model of bacterial infection, the acute inflammatory response, global tissue dysfunction, and a therapeutic intervention. Trial populations are constructed to reflect heterogeneity in bacterial load and virulence as well as propensity to mount and modulate an inflammatory response. We constructed a cohort of 1,000 trial patients submitted to therapy with one of three different doses of a neutralizing antibody directed against tumor necrosis factor (anti-TNF) for 6, 24, or 48 hrs. We present cytokine profiles over time and expected outcome for each cohort. We identify subgroups with high propensity for being helped or harmed by the proposed intervention and identify early serum markers for each of those subgroups. The mathematical simulation confirms the inability of simple markers to predict outcome of sepsis. The simulation clearly separates cases with favorable and unfavorable outcome on the basis of global tissue dysfunction. Control survival was 62.9% at 1 wk. Depending on dose and duration of treatment, survival ranged from 57.1% to 80.8%. Higher doses of anti-TNF, although effective, also result in considerable harm to patients. A statistical analysis based on a simulated cohort identified markers of favorable or adverse response to anti-TNF treatment.
CONCLUSIONS: A mathematical simulation of anti-TNF therapy identified clear windows of opportunity for this intervention as well as populations that can be harmed by anti-TNF therapy. The construction of an in silico clinical trial could provide profound insight into the design of clinical trials of immunomodulatory therapies, ranging from optimal patient selection to individualized dosage and duration of proposed therapeutic interventions.

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Year:  2004        PMID: 15483415     DOI: 10.1097/01.ccm.0000142394.28791.c3

Source DB:  PubMed          Journal:  Crit Care Med        ISSN: 0090-3493            Impact factor:   7.598


  68 in total

Review 1.  Translational potential of systems-based models of inflammation.

Authors:  P T Foteinou; S E Calvano; S F Lowry; I P Androulakis
Journal:  Clin Transl Sci       Date:  2009-02       Impact factor: 4.689

Review 2.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

3.  In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice.

Authors:  Jose M Prince; Ryan M Levy; John Bartels; Arie Baratt; John M Kane; Claudio Lagoa; Jonathan Rubin; Judy Day; Joyce Wei; Mitchell P Fink; Sanna M Goyert; Gilles Clermont; Timothy R Billiar; Yoram Vodovotz
Journal:  Mol Med       Date:  2006 Apr-Jun       Impact factor: 6.354

4.  Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness.

Authors:  Yoram Vodovotz; Gilles Clermont; C Anthony Hunt; Rolf Lefering; John Bartels; Ruediger Seydel; John Hotchkiss; Shlomo Ta'asan; Edmund Neugebauer; Gary An
Journal:  J Crit Care       Date:  2007-03       Impact factor: 3.425

Review 5.  Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

Authors:  Gary An; James Faeder; Yoram Vodovotz
Journal:  J Burn Care Res       Date:  2008 Mar-Apr       Impact factor: 1.845

6.  NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.

Authors:  P T Foteinou; E Yang; I P Androulakis
Journal:  Comput Chem Eng       Date:  2009-12-10       Impact factor: 3.845

Review 7.  Evaluating disorders with a complex genetics basis. the future roles of meta-analysis and systems biology.

Authors:  David C Whitcomb; Elie Aoun; Yoram Vodovotz; Gilles Clermont; M Michael Barmada
Journal:  Dig Dis Sci       Date:  2005-12       Impact factor: 3.199

8.  Agent-Based Modeling of Systemic Inflammation: A Pathway Toward Controlling Sepsis.

Authors:  Gary An; R Chase Cockrell
Journal:  Methods Mol Biol       Date:  2021

9.  Translational systems biology of inflammation and healing.

Authors:  Yoram Vodovotz
Journal:  Wound Repair Regen       Date:  2010 Jan-Feb       Impact factor: 3.617

10.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

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