Literature DB >> 16416160

Evaluating disorders with a complex genetics basis. the future roles of meta-analysis and systems biology.

David C Whitcomb1, Elie Aoun, Yoram Vodovotz, Gilles Clermont, M Michael Barmada.   

Abstract

Growing evidence suggests that complex gene and environment interactions underlie a number of diseases including chronic inflammatory diseases of the digestive system. The rapid advances in information and technology provide opportunities to discover the risks or etiology for a variety of disorders within individual patients. However, the availability of new data and new technology has outstripped the conceptual framework of simple disorders and challenges current statistical approaches. Here we address the issues surrounding study design and sample size for complex genetic traits, with special attention to meta-analysis and systems biology. We conclude that meta-analysis should play a limited role in evaluating studies of complex genetic diseases. Instead, systems biology-based approaches should be developed to integrate multiple, focused, and mechanistic association studies with the goal of assisting in the risk assessment of patients on a person-by-person basis.

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Year:  2005        PMID: 16416160     DOI: 10.1007/s10620-005-3033-7

Source DB:  PubMed          Journal:  Dig Dis Sci        ISSN: 0163-2116            Impact factor:   3.199


  9 in total

1.  Replication validity of genetic association studies.

Authors:  J P Ioannidis; E E Ntzani; T A Trikalinos; D G Contopoulos-Ioannidis
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

Review 2.  Genetic associations in large versus small studies: an empirical assessment.

Authors:  John P A Ioannidis; Thomas A Trikalinos; Evangelia E Ntzani; Despina G Contopoulos-Ioannidis
Journal:  Lancet       Date:  2003-02-15       Impact factor: 79.321

Review 3.  Genetic associations: false or true?

Authors:  John P A Ioannidis
Journal:  Trends Mol Med       Date:  2003-04       Impact factor: 11.951

4.  Establishment of genetic associations for complex diseases is independent of early study findings.

Authors:  Thomas A Trikalinos; Evangelia E Ntzani; Despina G Contopoulos-Ioannidis; John P A Ioannidis
Journal:  Eur J Hum Genet       Date:  2004-09       Impact factor: 4.246

5.  Assessing the probability that a positive report is false: an approach for molecular epidemiology studies.

Authors:  Sholom Wacholder; Stephen Chanock; Montserrat Garcia-Closas; Laure El Ghormli; Nathaniel Rothman
Journal:  J Natl Cancer Inst       Date:  2004-03-17       Impact factor: 13.506

Review 6.  Value of genetic testing in the management of pancreatitis.

Authors:  D C Whitcomb
Journal:  Gut       Date:  2004-11       Impact factor: 23.059

Review 7.  Mechanisms of disease: Advances in understanding the mechanisms leading to chronic pancreatitis.

Authors:  David C Whitcomb
Journal:  Nat Clin Pract Gastroenterol Hepatol       Date:  2004-11

8.  Clinical characterization of patients with idiopathic chronic pancreatitis and SPINK1 Mutations.

Authors:  A Schneider; M M Barmada; A Slivka; J A Martin; D C Whitcomb
Journal:  Scand J Gastroenterol       Date:  2004-09       Impact factor: 2.423

9.  In silico design of clinical trials: a method coming of age.

Authors:  Gilles Clermont; John Bartels; Rukmini Kumar; Greg Constantine; Yoram Vodovotz; Carson Chow
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

  9 in total
  9 in total

Review 1.  Going MAD: development of a "matrix academic division" to facilitate translating research to personalized medicine.

Authors:  David C Whitcomb
Journal:  Acad Med       Date:  2011-11       Impact factor: 6.893

Review 2.  Genes and environment in irritable bowel syndrome: one step forward.

Authors:  N J Talley
Journal:  Gut       Date:  2006-12       Impact factor: 23.059

3.  A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.

Authors:  Gary Nieman; David Brown; Joydeep Sarkar; Brian Kubiak; Cordelia Ziraldo; Joyeeta Dutta-Moscato; Christopher Vieau; Derek Barclay; Louis Gatto; Kristopher Maier; Gregory Constantine; Timothy R Billiar; Ruben Zamora; Qi Mi; Steve Chang; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2012-04       Impact factor: 7.598

4.  Multicenter approach to recurrent acute and chronic pancreatitis in the United States: the North American Pancreatitis Study 2 (NAPS2).

Authors:  David C Whitcomb; Dhiraj Yadav; Slivka Adam; Robert H Hawes; Randall E Brand; Michelle A Anderson; Mary E Money; Peter A Banks; Michele D Bishop; John Baillie; Stuart Sherman; James DiSario; Frank R Burton; Timothy B Gardner; Stephen T Amann; Andres Gelrud; Simon K Lo; Mark T DeMeo; William M Steinberg; Michael L Kochman; Babak Etemad; Christopher E Forsmark; Beth Elinoff; Julia B Greer; Michael O'Connell; Janette Lamb; M Michael Barmada
Journal:  Pancreatology       Date:  2008-09-03       Impact factor: 3.996

5.  Severe acute pancreatitis: capillary permeability model linking systemic inflammation to multiorgan failure.

Authors:  Nicole L Komara; Pedram Paragomi; Phil J Greer; Anette S Wilson; Cameron Breze; Georgios I Papachristou; David C Whitcomb
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2020-09-02       Impact factor: 4.052

6.  Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases.

Authors:  Douglas B Kell
Journal:  BMC Med Genomics       Date:  2009-01-08       Impact factor: 3.063

7.  Pathways to injury in chronic pancreatitis: decoding the role of the high-risk SPINK1 N34S haplotype using meta-analysis.

Authors:  Elie Aoun; Chung-Chou H Chang; Julia B Greer; Georgios I Papachristou; M Michael Barmada; David C Whitcomb
Journal:  PLoS One       Date:  2008-04-16       Impact factor: 3.240

Review 8.  Precision medicine for pancreatic diseases.

Authors:  Celeste A Shelton; David C Whitcomb
Journal:  Curr Opin Gastroenterol       Date:  2020-09       Impact factor: 2.741

9.  A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury.

Authors:  Nicole Y K Li; Katherine Verdolini; Gilles Clermont; Qi Mi; Elaine N Rubinstein; Patricia A Hebda; Yoram Vodovotz
Journal:  PLoS One       Date:  2008-07-30       Impact factor: 3.240

  9 in total

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