Literature DB >> 18354282

Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

Gary An1, James Faeder, Yoram Vodovotz.   

Abstract

The pathophysiology of the burn patient manifests the full spectrum of the complexity of the inflammatory response. In the acute phase, inflammation may have negative effects via capillary leak, the propagation of inhalation injury, and development of multiple organ failure. Attempts to mediate these processes remain a central subject of burn care research. Conversely, inflammation is a necessary prologue and component in the later stage processes of wound healing. Despite the volume of information concerning the cellular and molecular processes involved in inflammation, there exists a significant gap between the knowledge of mechanistic pathophysiology and the development of effective clinical therapeutic regimens. Translational systems biology (TSB) is the application of dynamic mathematical modeling and certain engineering principles to biological systems to integrate mechanism with phenomenon and, importantly, to revise clinical practice. This study will review the existing applications of TSB in the areas of inflammation and wound healing, relate them to specific areas of interest to the burn community, and present an integrated framework that links TSB with traditional burn research.

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Mesh:

Year:  2008        PMID: 18354282      PMCID: PMC3640324          DOI: 10.1097/BCR.0b013e31816677c8

Source DB:  PubMed          Journal:  J Burn Care Res        ISSN: 1559-047X            Impact factor:   1.845


  70 in total

Review 1.  Complexity and non-linearity in shock research: reductionism or synthesis?

Authors:  E A Neugebauer; C Willy; S Sauerland
Journal:  Shock       Date:  2001-10       Impact factor: 3.454

2.  The role of initial trauma in the host's response to injury and hemorrhage: insights from a correlation of mathematical simulations and hepatic transcriptomic analysis.

Authors:  Claudio E Lagoa; John Bartels; Arie Baratt; George Tseng; Gilles Clermont; Mitchell P Fink; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2006-12       Impact factor: 3.454

3.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

4.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

5.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

6.  Hypertonic saline dextran after burn injury decreases inflammatory cytokine responses to subsequent pneumonia-related sepsis.

Authors:  Jureta W Horton; David L Maass; D Jean White
Journal:  Am J Physiol Heart Circ Physiol       Date:  2005-11-18       Impact factor: 4.733

7.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

Review 8.  Injury research in the genomic era.

Authors:  J Perren Cobb; Grant E O'Keefe
Journal:  Lancet       Date:  2004-06-19       Impact factor: 79.321

9.  A mechanochemical model for adult dermal wound contraction and the permanence of the contracted tissue displacement profile.

Authors:  L Olsen; J A Sherratt; P K Maini
Journal:  J Theor Biol       Date:  1995-11-21       Impact factor: 2.691

10.  A non-linear mathematical model for the in vivo evaluation of the RES phagocytic function.

Authors:  I B Bondareva; A S Parfenov
Journal:  Medinfo       Date:  1995
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  33 in total

Review 1.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

2.  NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.

Authors:  P T Foteinou; E Yang; I P Androulakis
Journal:  Comput Chem Eng       Date:  2009-12-10       Impact factor: 3.845

3.  A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.

Authors:  Gary Nieman; David Brown; Joydeep Sarkar; Brian Kubiak; Cordelia Ziraldo; Joyeeta Dutta-Moscato; Christopher Vieau; Derek Barclay; Louis Gatto; Kristopher Maier; Gregory Constantine; Timothy R Billiar; Ruben Zamora; Qi Mi; Steve Chang; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2012-04       Impact factor: 7.598

4.  Computational Modeling of Inflammation and Wound Healing.

Authors:  Cordelia Ziraldo; Qi Mi; Gary An; Yoram Vodovotz
Journal:  Adv Wound Care (New Rochelle)       Date:  2013-11       Impact factor: 4.730

5.  Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model.

Authors:  Moses Kim; Scott Christley; John C Alverdy; Donald Liu; Gary An
Journal:  Surg Infect (Larchmt)       Date:  2012-01-04       Impact factor: 2.150

6.  Agent-Based Modeling of Systemic Inflammation: A Pathway Toward Controlling Sepsis.

Authors:  Gary An; R Chase Cockrell
Journal:  Methods Mol Biol       Date:  2021

7.  Translational systems biology of inflammation and healing.

Authors:  Yoram Vodovotz
Journal:  Wound Repair Regen       Date:  2010 Jan-Feb       Impact factor: 3.617

8.  Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis.

Authors:  Julia C Arciero; G Bard Ermentrout; Jeffrey S Upperman; Yoram Vodovotz; Jonathan E Rubin
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

9.  Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes.

Authors:  Xu Dong; Panagiota T Foteinou; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

Review 10.  In silico modeling: methods and applications to trauma and sepsis.

Authors:  Yoram Vodovotz; Timothy R Billiar
Journal:  Crit Care Med       Date:  2013-08       Impact factor: 7.598

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