Literature DB >> 15466158

A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size.

Paul Jorgensen1, Ivan Rupes, Jeffrey R Sharom, Lisa Schneper, James R Broach, Mike Tyers.   

Abstract

Cell-size homeostasis entails a fundamental balance between growth and division. The budding yeast Saccharomyces cerevisiae establishes this balance by enforcing growth to a critical cell size prior to cell cycle commitment (Start) in late G1 phase. Nutrients modulate the critical size threshold, such that cells are large in rich medium and small in poor medium. Here, we show that two potent negative regulators of Start, Sfp1 and Sch9, are activators of the ribosomal protein (RP) and ribosome biogenesis (Ribi) regulons, the transcriptional programs that dictate ribosome synthesis rate in accord with environmental and intracellular conditions. Sfp1 and Sch9 are required for carbon-source modulation of cell size and are regulated at the level of nuclear localization and abundance, respectively. Sfp1 nuclear concentration responds rapidly to nutrient and stress conditions and is regulated by the Ras/PKA and TOR signaling pathways. In turn, Sfp1 influences the nuclear localization of Fhl1 and Ifh1, which bind to RP gene promoters. Starvation or the absence of Sfp1 causes Fhl1 and Ifh1 to localize to nucleolar regions, concomitant with reduced RP gene transcription. These findings suggest that nutrient signals set the critical cell-size threshold via Sfp1 and Sch9-mediated control of ribosome biosynthetic rates.

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Year:  2004        PMID: 15466158      PMCID: PMC529537          DOI: 10.1101/gad.1228804

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  72 in total

1.  Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.

Authors:  J D Hughes; P W Estep; S Tavazoie; G M Church
Journal:  J Mol Biol       Date:  2000-03-10       Impact factor: 5.469

2.  Repression of ribosome and tRNA synthesis in secretion-defective cells is signaled by a novel branch of the cell integrity pathway.

Authors:  Y Li; R D Moir; I K Sethy-Coraci; J R Warner; I M Willis
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

Review 3.  An encore for ribosome biogenesis in the control of cell proliferation.

Authors:  G Thomas
Journal:  Nat Cell Biol       Date:  2000-05       Impact factor: 28.824

Review 4.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

5.  Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins.

Authors:  J S Hardwick; F G Kuruvilla; J K Tong; A F Shamji; S L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  The TOR signaling cascade regulates gene expression in response to nutrients.

Authors:  M E Cardenas; N S Cutler; M C Lorenz; C J Di Como; J Heitman
Journal:  Genes Dev       Date:  1999-12-15       Impact factor: 11.361

7.  Genetic analysis of the shared role of CLN3 and BCK2 at the G(1)-S transition in Saccharomyces cerevisiae.

Authors:  H Wijnen; B Futcher
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

8.  Drosophila S6 kinase: a regulator of cell size.

Authors:  J Montagne; M J Stewart; H Stocker; E Hafen; S C Kozma; G Thomas
Journal:  Science       Date:  1999-09-24       Impact factor: 47.728

9.  Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae.

Authors:  T Powers; P Walter
Journal:  Mol Biol Cell       Date:  1999-04       Impact factor: 4.138

10.  Functional counterparts of mammalian protein kinases PDK1 and SGK in budding yeast.

Authors:  A Casamayor; P D Torrance; T Kobayashi; J Thorner; D R Alessi
Journal:  Curr Biol       Date:  1999-02-25       Impact factor: 10.834

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  313 in total

Review 1.  Staying alive: metabolic adaptations to quiescence.

Authors:  James R Valcourt; Johanna M S Lemons; Erin M Haley; Mina Kojima; Olukunle O Demuren; Hilary A Coller
Journal:  Cell Cycle       Date:  2012-05-01       Impact factor: 4.534

2.  Stb3 plays a role in the glucose-induced transition from quiescence to growth in Saccharomyces cerevisiae.

Authors:  Dritan Liko; Michael K Conway; Douglas S Grunwald; Warren Heideman
Journal:  Genetics       Date:  2010-04-12       Impact factor: 4.562

3.  mTOR associates with TFIIIC, is found at tRNA and 5S rRNA genes, and targets their repressor Maf1.

Authors:  Theodoros Kantidakis; Ben A Ramsbottom; Joanna L Birch; Sarah N Dowding; Robert J White
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-11       Impact factor: 11.205

4.  Reduction in ribosomal protein synthesis is sufficient to explain major effects on ribosome production after short-term TOR inactivation in Saccharomyces cerevisiae.

Authors:  Alarich Reiter; Robert Steinbauer; Anja Philippi; Jochen Gerber; Herbert Tschochner; Philipp Milkereit; Joachim Griesenbeck
Journal:  Mol Cell Biol       Date:  2010-12-13       Impact factor: 4.272

5.  Gcn4p-mediated transcriptional repression of ribosomal protein genes under amino-acid starvation.

Authors:  Yoo Jin Joo; Jin-Ha Kim; Un-Beom Kang; Myeong-Hee Yu; Joon Kim
Journal:  EMBO J       Date:  2010-12-24       Impact factor: 11.598

Review 6.  Transcriptional regulation in yeast during diauxic shift and stationary phase.

Authors:  Luciano Galdieri; Swati Mehrotra; Sean Yu; Ales Vancura
Journal:  OMICS       Date:  2010-09-23

7.  A complex-based reconstruction of the Saccharomyces cerevisiae interactome.

Authors:  Haidong Wang; Boyko Kakaradov; Sean R Collins; Lena Karotki; Dorothea Fiedler; Michael Shales; Kevan M Shokat; Tobias C Walther; Nevan J Krogan; Daphne Koller
Journal:  Mol Cell Proteomics       Date:  2009-01-27       Impact factor: 5.911

8.  Arsenic toxicity to Saccharomyces cerevisiae is a consequence of inhibition of the TORC1 kinase combined with a chronic stress response.

Authors:  Dagmar Hosiner; Harri Lempiäinen; Wolfgang Reiter; Joerg Urban; Robbie Loewith; Gustav Ammerer; Rudolf Schweyen; David Shore; Christoph Schüller
Journal:  Mol Biol Cell       Date:  2008-12-10       Impact factor: 4.138

9.  SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation.

Authors:  Chi Kwan Tsang; Miao Chen; Xin Cheng; Yanmei Qi; Yin Chen; Ishani Das; Xiaoxing Li; Brinda Vallat; Li-Wu Fu; Chao-Nan Qian; Hui-Yun Wang; Eileen White; Stephen K Burley; X F Steven Zheng
Journal:  Mol Cell       Date:  2018-05-03       Impact factor: 17.970

10.  The Candida albicans pescadillo homolog is required for normal hypha-to-yeast morphogenesis and yeast proliferation.

Authors:  Junqing Shen; Leah E Cowen; April M Griffin; Leon Chan; Julia R Köhler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

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