Literature DB >> 20863251

Transcriptional regulation in yeast during diauxic shift and stationary phase.

Luciano Galdieri1, Swati Mehrotra, Sean Yu, Ales Vancura.   

Abstract

The preferred source of carbon and energy for yeast cells is glucose. When yeast cells are grown in liquid cultures, they metabolize glucose predominantly by glycolysis, releasing ethanol in the medium. When glucose becomes limiting, the cells enter diauxic shift characterized by decreased growth rate and by switching metabolism from glycolysis to aerobic utilization of ethanol. When ethanol is depleted from the medium, cells enter quiescent or stationary phase G(0). Cells in diauxic shift and stationary phase are stressed by the lack of nutrients and by accumulation of toxic metabolites, primarily from the oxidative metabolism, and are differentiated in ways that allow them to maintain viability for extended periods of time. The transition of yeast cells from exponential phase to quiescence is regulated by protein kinase A, TOR, Snf1p, and Rim15p pathways that signal changes in availability of nutrients, converge on transcriptional factors Msn2p, Msn4p, and Gis1p, and elicit extensive reprogramming of the transcription machinery. However, the events in transcriptional regulation during diauxic shift and quiescence are incompletely understood. Because cells from multicellular eukaryotic organisms spend most of their life in G(0) phase, understanding transcriptional regulation in quiescence will inform other fields, such as cancer, development, and aging.

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Year:  2010        PMID: 20863251      PMCID: PMC3133784          DOI: 10.1089/omi.2010.0069

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  130 in total

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Journal:  Genetics       Date:  2000-02       Impact factor: 4.562

Review 2.  Snf1 protein kinase: a key player in the response to cellular stress in yeast.

Authors:  P Sanz
Journal:  Biochem Soc Trans       Date:  2003-02       Impact factor: 5.407

3.  Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

Authors:  Marijana Radonjic; Jean-Christophe Andrau; Philip Lijnzaad; Patrick Kemmeren; Thessa T J P Kockelkorn; Dik van Leenen; Nynke L van Berkum; Frank C P Holstege
Journal:  Mol Cell       Date:  2005-04-15       Impact factor: 17.970

4.  Nuclear localization destabilizes the stress-regulated transcription factor Msn2.

Authors:  Erich Durchschlag; Wolfgang Reiter; Gustav Ammerer; Christoph Schüller
Journal:  J Biol Chem       Date:  2004-10-22       Impact factor: 5.157

5.  Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation.

Authors:  Cecilia Garmendia-Torres; Albert Goldbeter; Michel Jacquet
Journal:  Curr Biol       Date:  2007-06-19       Impact factor: 10.834

Review 6.  RAS genes and growth control in Saccharomyces cerevisiae.

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Journal:  J Bacteriol       Date:  1986-05       Impact factor: 3.490

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Journal:  Microbiol Rev       Date:  1993-06

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Authors:  J Plesset; J R Ludwig; B S Cox; C S McLaughlin
Journal:  J Bacteriol       Date:  1987-02       Impact factor: 3.490

9.  Heat shock-induced degradation of Msn2p, a Saccharomyces cerevisiae transcription factor, occurs in the nucleus.

Authors:  S Lallet; H Garreau; C Poisier; E Boy-Marcotte; M Jacquet
Journal:  Mol Genet Genomics       Date:  2004-09-16       Impact factor: 3.291

10.  Activation of the Saccharomyces cerevisiae heat shock transcription factor under glucose starvation conditions by Snf1 protein kinase.

Authors:  Ji-Sook Hahn; Dennis J Thiele
Journal:  J Biol Chem       Date:  2003-11-10       Impact factor: 5.157

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  78 in total

1.  Lithocholic bile acid accumulated in yeast mitochondria orchestrates a development of an anti-aging cellular pattern by causing age-related changes in cellular proteome.

Authors:  Adam Beach; Vincent R Richard; Simon Bourque; Tatiana Boukh-Viner; Pavlo Kyryakov; Alejandra Gomez-Perez; Anthony Arlia-Ciommo; Rachel Feldman; Anna Leonov; Amanda Piano; Veronika Svistkova; Vladimir I Titorenko
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

2.  Genetic and functional investigation of Zn(2)Cys(6) transcription factors RSE2 and RSE3 in Podospora anserina.

Authors:  Elodie Bovier; Carole H Sellem; Adeline Humbert; Annie Sainsard-Chanet
Journal:  Eukaryot Cell       Date:  2013-11-01

3.  The expression of PHO92 is regulated by Gcr1, and Pho92 is involved in glucose metabolism in Saccharomyces cerevisiae.

Authors:  Hyun-Jun Kang; Miwha Chang; Chang-Min Kang; Yong-Sung Park; Bong-June Yoon; Tae-Hyoung Kim; Cheol-Won Yun
Journal:  Curr Genet       Date:  2014-05-22       Impact factor: 3.886

4.  Growth phase-dependent roles of Sir2 in oxidative stress resistance and chronological lifespan in yeast.

Authors:  Woo Kyu Kang; Yeong Hyeock Kim; Byoung-Soo Kim; Jeong-Yoon Kim
Journal:  J Microbiol       Date:  2014-07-05       Impact factor: 3.422

5.  Changes in transcription and metabolism during the early stage of replicative cellular senescence in budding yeast.

Authors:  Yuka Kamei; Yoshihiro Tamada; Yasumune Nakayama; Eiichiro Fukusaki; Yukio Mukai
Journal:  J Biol Chem       Date:  2014-10-07       Impact factor: 5.157

Review 6.  Warburg revisited: regulation of mitochondrial metabolism by voltage-dependent anion channels in cancer cells.

Authors:  Eduardo N Maldonado; John J Lemasters
Journal:  J Pharmacol Exp Ther       Date:  2012-06-13       Impact factor: 4.030

7.  Increased heme synthesis in yeast induces a metabolic switch from fermentation to respiration even under conditions of glucose repression.

Authors:  Tiantian Zhang; Pengli Bu; Joey Zeng; Ales Vancura
Journal:  J Biol Chem       Date:  2017-08-22       Impact factor: 5.157

8.  Mitochondrial cysteinyl-tRNA synthetase is expressed via alternative transcriptional initiation regulated by energy metabolism in yeast cells.

Authors:  Akira Nishimura; Ryo Nasuno; Yuki Yoshikawa; Minkyung Jung; Tomoaki Ida; Tetsuro Matsunaga; Masanobu Morita; Hiroshi Takagi; Hozumi Motohashi; Takaaki Akaike
Journal:  J Biol Chem       Date:  2019-07-26       Impact factor: 5.157

Review 9.  Unraveling quiescence-specific repressive chromatin domains.

Authors:  Sarah G Swygert; Toshio Tsukiyama
Journal:  Curr Genet       Date:  2019-05-04       Impact factor: 3.886

10.  The bubble-induced population dynamics of fermenting yeasts.

Authors:  Atul Srivastava; Kenji Kikuchi; Takuji Ishikawa
Journal:  J R Soc Interface       Date:  2020-11-18       Impact factor: 4.118

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