Literature DB >> 12867987

Structural transitions and elasticity from torque measurements on DNA.

Zev Bryant1, Michael D Stone, Jeff Gore, Steven B Smith, Nicholas R Cozzarelli, Carlos Bustamante.   

Abstract

Knowledge of the elastic properties of DNA is required to understand the structural dynamics of cellular processes such as replication and transcription. Measurements of force and extension on single molecules of DNA have allowed direct determination of the molecule's mechanical properties, provided rigorous tests of theories of polymer elasticity, revealed unforeseen structural transitions induced by mechanical stresses, and established an experimental and conceptual framework for mechanical assays of enzymes that act on DNA. However, a complete description of DNA mechanics must also consider the effects of torque, a quantity that has hitherto not been directly measured in micromanipulation experiments. We have measured torque as a function of twist for stretched DNA--torsional strain in over- or underwound molecules was used to power the rotation of submicrometre beads serving as calibrated loads. Here we report tests of the linearity of DNA's twist elasticity, direct measurements of the torsional modulus (finding a value approximately 40% higher than generally accepted), characterization of torque-induced structural transitions, and the establishment of a framework for future assays of torque and twist generation by DNA-dependent enzymes. We also show that cooperative structural transitions in DNA can be exploited to construct constant-torque wind-up motors and force-torque converters.

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Year:  2003        PMID: 12867987     DOI: 10.1038/nature01810

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  152 in total

1.  Peptide nucleic acids as tools for single-molecule sequence detection and manipulation.

Authors:  Hagar Zohar; Craig L Hetherington; Carlos Bustamante; Susan J Muller
Journal:  Nano Lett       Date:  2010-11-10       Impact factor: 11.189

2.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

3.  Kinesin moves by an asymmetric hand-over-hand mechanism.

Authors:  Charles L Asbury; Adrian N Fehr; Steven M Block
Journal:  Science       Date:  2003-12-04       Impact factor: 47.728

4.  Probing protein mechanics: residue-level properties and their use in defining domains.

Authors:  Isabelle Navizet; Fabien Cailliez; Richard Lavery
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

5.  Twisting and untwisting a single DNA molecule covered by RecA protein.

Authors:  Renaud Fulconis; Aurélien Bancaud; Jean-Francois Allemand; Vincent Croquette; Marie Dutreix; Jean-Louis Viovy
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

6.  Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Authors:  Xinghua Zhang; Hu Chen; Hongxia Fu; Patrick S Doyle; Jie Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

7.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

8.  Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition.

Authors:  Jeff Wereszczynski; Ioan Andricioaei
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

Review 9.  Single-molecule measurements of DNA topology and topoisomerases.

Authors:  Keir C Neuman
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

10.  Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices.

Authors:  Sumitabha Brahmachari; Kathryn H Gunn; Rebecca D Giuntoli; Alfonso Mondragón; John F Marko
Journal:  Phys Rev Lett       Date:  2017-10-31       Impact factor: 9.161

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