Literature DB >> 14507678

Onset of DNA aggregation in presence of monovalent and multivalent counterions.

Yoram Burak1, Gil Ariel, David Andelman.   

Abstract

We address theoretically aggregation of DNA segments by multivalent polyamines such as spermine and spermidine. In experiments, the aggregation occurs above a certain threshold concentration of multivalent ions. We demonstrate that the dependence of this threshold on the concentration of DNA has a simple form. When the DNA concentration c(DNA) is smaller than the monovalent salt concentration, the threshold multivalent ion concentration depends linearly on c(DNA), having the form alphac(DNA) + beta. The coefficients alpha and beta are related to the density profile of multivalent counterions around isolated DNA chains, at the onset of their aggregation. This analysis agrees extremely well with recent detailed measurements on DNA aggregation in the presence of spermine. From the fit to the experimental data, the number of condensed multivalent counterions per DNA chain can be deduced. A few other conclusions can then be reached: 1), the number of condensed spermine ions at the onset of aggregation decreases with the addition of monovalent salt; 2), the Poisson-Boltzmann theory overestimates the number of condensed multivalent ions at high monovalent salt concentrations; and 3), our analysis of the data indicates that the DNA charge is not overcompensated by spermine at the onset of aggregation.

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Year:  2003        PMID: 14507678      PMCID: PMC1303439          DOI: 10.1016/S0006-3495(03)74638-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

1.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

2.  Direct measurement of temperature-dependent solvation forces between DNA double helices.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

3.  DNA mesophases induced by spermidine: structural properties and biological implications.

Authors:  J Pelta; D Durand; J Doucet; F Livolant
Journal:  Biophys J       Date:  1996-07       Impact factor: 4.033

4.  DNA aggregation induced by polyamines and cobalthexamine.

Authors:  J Pelta; F Livolant; J L Sikorav
Journal:  J Biol Chem       Date:  1996-03-08       Impact factor: 5.157

5.  Equilibrium dialysis study of binding of hexammine cobalt(III) to DNA.

Authors:  G E Plum; V A Bloomfield
Journal:  Biopolymers       Date:  1988-06       Impact factor: 2.505

Review 6.  Polyamines.

Authors:  C W Tabor; H Tabor
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

7.  Monomolecular condensation of lambda-DNA induced by cobalt hexamine.

Authors:  J Widom; R L Baldwin
Journal:  Biopolymers       Date:  1983-06       Impact factor: 2.505

8.  Comparison of polyelectrolyte theories of the binding of cations to DNA.

Authors:  R W Wilson; D C Rau; V A Bloomfield
Journal:  Biophys J       Date:  1980-05       Impact factor: 4.033

9.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

10.  Spermine-induced aggregation of DNA, nucleosome, and chromatin.

Authors:  E Raspaud; I Chaperon; A Leforestier; F Livolant
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

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  13 in total

1.  Structural polymorphism of the cytoskeleton: a model of linker-assisted filament aggregation.

Authors:  Itamar Borukhov; Robijn F Bruinsma; William M Gelbart; Andrea J Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-24       Impact factor: 11.205

2.  Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions.

Authors:  Kurt Andresen; Xiangyun Qiu; Suzette A Pabit; Jessica S Lamb; Hye Yoon Park; Lisa W Kwok; Lois Pollack
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

3.  Aggregation and adsorption at the air-water interface of bacteriophage phiX174 single-stranded DNA.

Authors:  C Douarche; J-L Sikorav; A Goldar
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

4.  Ligand-induced DNA condensation: choosing the model.

Authors:  Vladimir B Teif
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

5.  A new approach to DNA bending by polyamines and its implication in DNA condensation.

Authors:  David Pastré; Olivier Piétrement; Fabrice Landousy; Loïc Hamon; Isabelle Sorel; Marie-Odile David; Etienne Delain; Alain Zozime; Eric Le Cam
Journal:  Eur Biophys J       Date:  2005-10-25       Impact factor: 1.733

6.  Herpes virus genome, the pressure is on.

Authors:  David W Bauer; Jamie B Huffman; Fred L Homa; Alex Evilevitch
Journal:  J Am Chem Soc       Date:  2013-07-23       Impact factor: 15.419

7.  Interhelical spacing in liquid crystalline spermine and spermidine-DNA precipitates.

Authors:  E Raspaud; D Durand; F Livolant
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

8.  Cyclic RGD-targeting of reversibly stabilized DNA nanoparticles enhances cell uptake and transfection in vitro.

Authors:  Qing-Hui Zhou; Ye-Zi You; Chao Wu; Yi Huang; David Oupický
Journal:  J Drug Target       Date:  2009-06       Impact factor: 5.121

9.  Abrupt transition from a free, repulsive to a condensed, attractive DNA phase, induced by multivalent polyamine cations.

Authors:  Xiangyun Qiu; Kurt Andresen; Jessica S Lamb; Lisa W Kwok; Lois Pollack
Journal:  Phys Rev Lett       Date:  2008-11-26       Impact factor: 9.161

10.  A histone-like protein induces plasmid DNA to form liquid crystals in vitro and gene compaction in vivo.

Authors:  Shiyong Sun; Mingxue Liu; Faqin Dong; Shenglan Fan; Yanchen Yao
Journal:  Int J Mol Sci       Date:  2013-12-06       Impact factor: 5.923

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