Literature DB >> 15363897

Retrotransposition of Alu elements: how many sources?

Richard Cordaux1, Dale J Hedges, Mark A Batzer.   

Abstract

It is generally thought that only a few Alu elements are capable of retrotransposition and that these 'master' sources produce inactive copies. Here, we use a network phylogenetic approach to demonstrate that recently integrated human-specific Alu subfamilies typically contain 10-20% of secondary source elements that contributed 20-40% of all subfamily members. This multiplicity of source elements provides new insight into the remarkably successful amplification strategy of the Alu family.

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Year:  2004        PMID: 15363897     DOI: 10.1016/j.tig.2004.07.012

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  57 in total

1.  Laboratory methods for the analysis of primate mobile elements.

Authors:  David A Ray; Kyudong Han; Jerilyn A Walker; Mark A Batzer
Journal:  Methods Mol Biol       Date:  2010

2.  Assembly and characterization of novel Alu inserts detected from next-generation sequencing data.

Authors:  Harun Mustafa; Matei David; Michael Brudno
Journal:  Mob Genet Elements       Date:  2014-12-12

3.  The distribution of L1 and Alu retroelements in relation to GC content on human sex chromosomes is consistent with the ectopic recombination model.

Authors:  György Abrusán; Hans-Jürgen Krambeck
Journal:  J Mol Evol       Date:  2006-09-04       Impact factor: 2.395

4.  Teaching an old dog new tricks: SINEs of canine genomic diversity.

Authors:  Richard Cordaux; Mark A Batzer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

5.  Recombinant SINEs are formed at high frequency during induced retrotransposition in vivo.

Authors:  Vijay Pal Yadav; Prabhat Kumar Mandal; Alok Bhattacharya; Sudha Bhattacharya
Journal:  Nat Commun       Date:  2012-05-22       Impact factor: 14.919

6.  LINEs and SINEs of primate evolution.

Authors:  Miriam K Konkel; Jerilyn A Walker; Mark A Batzer
Journal:  Evol Anthropol       Date:  2010-11-01

7.  DNA methylation variation of human-specific Alu repeats.

Authors:  Arundhati Bakshi; Scott W Herke; Mark A Batzer; Joomyeong Kim
Journal:  Epigenetics       Date:  2016-02-18       Impact factor: 4.528

8.  A Two-State Model of Tree Evolution and Its Applications to Alu Retrotransposition.

Authors:  Niema Moshiri; Siavash Mirarab
Journal:  Syst Biol       Date:  2018-05-01       Impact factor: 15.683

Review 9.  The impact of retrotransposons on human genome evolution.

Authors:  Richard Cordaux; Mark A Batzer
Journal:  Nat Rev Genet       Date:  2009-10       Impact factor: 53.242

10.  Source gene composition and gene conversion of the AluYh and AluYi lineages of retrotransposons.

Authors:  Pamela Styles; John F Y Brookfield
Journal:  BMC Evol Biol       Date:  2009-05-14       Impact factor: 3.260

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