Literature DB >> 20238081

Laboratory methods for the analysis of primate mobile elements.

David A Ray1, Kyudong Han, Jerilyn A Walker, Mark A Batzer.   

Abstract

Mobile elements represent a unique and powerful set of tools for understanding the variation in a genome. Methods exist not only to utilize the polymorphisms among and within taxa to various ends but also to investigate the mechanism through which mobilization occurs. The number of methods to accomplish these ends is ever growing. Here, we present several protocols designed to assay mobile element-based variation within and among individual genomes.

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Year:  2010        PMID： 20238081      PMCID： PMC2880178          DOI： 10.1007/978-1-60327-367-1_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  91 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  A transient assay reveals that cultured human cells can accommodate multiple LINE-1 retrotransposition events.

Authors:  W Wei; T A Morrish; R S Alisch; J V Moran
Journal:  Anal Biochem       Date:  2000-09-10       Impact factor: 3.365

3.  A more sensitive method for the quantitation of genomic DNA by Alu amplification.

Authors:  Melanie E Sifis; Katrin Both; Leigh A Burgoyne
Journal:  J Forensic Sci       Date:  2002-05       Impact factor: 1.832

Review 4.  Quantification of DNA in forensic samples.

Authors:  Janice A Nicklas; Eric Buel
Journal:  Anal Bioanal Chem       Date:  2003-05-09       Impact factor: 4.142

5.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

6.  Genomic deletions created upon LINE-1 retrotransposition.

Authors:  Nicolas Gilbert; Sheila Lutz-Prigge; John V Moran
Journal:  Cell       Date:  2002-08-09       Impact factor: 41.582

7.  Recently integrated Alu retrotransposons are essentially neutral residents of the human genome.

Authors:  Richard Cordaux; Jungnam Lee; Liv Dinoso; Mark A Batzer
Journal:  Gene       Date:  2006-03-09       Impact factor: 3.688

8.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

9.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

10.  Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

Authors:  W Scott Watkins; Alan R Rogers; Christopher T Ostler; Steve Wooding; Michael J Bamshad; Anna-Marie E Brassington; Marion L Carroll; Son V Nguyen; Jerilyn A Walker; B V Ravi Prasad; P Govinda Reddy; Pradipta K Das; Mark A Batzer; Lynn B Jorde
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043
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  1 in total

Review 1.  Biodistribution studies for cell therapy products: Current status and issues.

Authors:  Yoshiteru Kamiyama; Yoichi Naritomi; Yuu Moriya; Syunsuke Yamamoto; Tsukasa Kitahashi; Toshihiko Maekawa; Masahiro Yahata; Takeshi Hanada; Asako Uchiyama; Akari Noumaru; Yoshiyuki Koga; Tomoaki Higuchi; Masahiko Ito; Hiroyuki Komatsu; Sosuke Miyoshi; Sadaaki Kimura; Nobuhiro Umeda; Eriko Fujita; Naoko Tanaka; Taku Sugita; Satoru Takayama; Akihiko Kurogi; Satoshi Yasuda; Yoji Sato
Journal:  Regen Ther       Date:  2021-07-12       Impact factor: 3.419
  1 in total

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