Literature DB >> 15347594

Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers.

J Liam McWhirter1, Gary Ayton, Gregory A Voth.   

Abstract

A method for simulating a two-component lipid bilayer membrane in the mesoscopic regime is presented. The membrane is modeled as an elastic network of bonded points; the spring constants of these bonds are parameterized by the microscopic bulk modulus estimated from earlier atomistic nonequilibrium molecular dynamics simulations for several bilayer mixtures of DMPC and cholesterol. The modulus depends on the composition of a point in the elastic membrane model. The dynamics of the composition field is governed by the Cahn-Hilliard equation where a free energy functional models the coupling between the composition and curvature fields. The strength of the bonds in the elastic network are then modulated noting local changes in the composition and using a fit to the nonequilibrium molecular dynamics simulation data. Estimates for the magnitude and sign of the coupling parameter in the free energy model are made treating the bending modulus as a function of composition. A procedure for assigning the remaining parameters in the free energy model is also outlined. It is found that the square of the mean curvature averaged over the entire simulation box is enhanced if the strength of the bonds in the elastic network are modulated in response to local changes in the composition field. We suggest that this simulation method could also be used to determine if phase coexistence affects the stress response of the membrane to uniform dilations in area. This response, measured in the mesoscopic regime, is already known to be conditioned or renormalized by thermal undulations.

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Year:  2004        PMID: 15347594      PMCID: PMC1304794          DOI: 10.1529/biophysj.104.045716

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

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Journal:  Phys Rev Lett       Date:  1996-12-02       Impact factor: 9.161

2.  Phase separation and shape deformation of two-phase membranes

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-01

3.  Collective membrane motions in the mesoscopic range and their modulation by the binding of a monomolecular protein layer of streptavidin studied by dynamic light scattering.

Authors:  R Hirn; R Benz; T M Bayerl
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-05

4.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

5.  Bridging microscopic and mesoscopic simulations of lipid bilayers.

Authors:  Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

6.  Entropy-driven tension and bending elasticity in condensed-fluid membranes.

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Journal:  Phys Rev Lett       Date:  1990-04-23       Impact factor: 9.161

7.  Mechanical properties of vesicles. II. A model for osmotic swelling and lysis.

Authors:  F R Hallett; J Marsh; B G Nickel; J M Wood
Journal:  Biophys J       Date:  1993-02       Impact factor: 4.033

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles.

Authors:  Siewert J Marrink; Alan E Mark
Journal:  J Am Chem Soc       Date:  2003-12-10       Impact factor: 15.419

10.  Phase equilibria in binary mixtures of phosphatidylcholine and cholesterol.

Authors:  D J Recktenwald; H M McConnell
Journal:  Biochemistry       Date:  1981-07-21       Impact factor: 3.162

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  19 in total

Review 1.  Implicit solvent simulation models for biomembranes.

Authors:  Grace Brannigan; Lawrence C-L Lin; Frank L H Brown
Journal:  Eur Biophys J       Date:  2005-09-27       Impact factor: 1.733

2.  Coupling field theory with continuum mechanics: a simulation of domain formation in giant unilamellar vesicles.

Authors:  Gary S Ayton; J Liam McWhirter; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

3.  Multi-scale modeling of phase separation in mixed lipid bilayers.

Authors:  Qiang Shi; Gregory A Voth
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

4.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

Authors:  Gary S Ayton; Philip D Blood; Gregory A Voth
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

5.  Modelling and simulations of multi-component lipid membranes and open membranes via diffuse interface approaches.

Authors:  Xiaoqiang Wang; Qiang Du
Journal:  J Math Biol       Date:  2007-08-15       Impact factor: 2.259

6.  Protein-mediated transformation of lipid vesicles into tubular networks.

Authors:  Mijo Simunovic; Carsten Mim; Thomas C Marlovits; Guenter Resch; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

7.  New insights into BAR domain-induced membrane remodeling.

Authors:  Gary S Ayton; Edward Lyman; Vinod Krishna; Richard D Swenson; Carsten Mim; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

Review 8.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

9.  Nonaxisymmetric Shapes of Biological Membranes from Locally Induced Curvature.

Authors:  Yannick A D Omar; Amaresh Sahu; Roger A Sauer; Kranthi K Mandadapu
Journal:  Biophys J       Date:  2020-07-31       Impact factor: 4.033

10.  The mesoscopic membrane with proteins (MesM-P) model.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Chem Phys       Date:  2017-07-28       Impact factor: 3.488

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