Literature DB >> 15340137

Topologically driven swelling of a polymer loop.

Nathan T Moore1, Rhonald C Lua, Alexander Y Grosberg.   

Abstract

Numerical studies of the average size of trivially knotted polymer loops with no excluded volume were undertaken. Topology was identified by Alexander and Vassiliev degree 2 invariants. Probability of a trivial knot, average gyration radius, and probability density distributions as functions of gyration radius were generated for loops of up to N = 3,000 segments. Gyration radii of trivially knotted loops were found to follow a power law similar to that of self-avoiding walks consistent with earlier theoretical predictions.

Entities:  

Year:  2004        PMID: 15340137      PMCID: PMC518774          DOI: 10.1073/pnas.0403383101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

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Journal:  Phys Rev Lett       Date:  2000-10-30       Impact factor: 9.161

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Journal:  Phys Rev Lett       Date:  1991-04-29       Impact factor: 9.161

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Authors:  Akos Dobay; Jacques Dubochet; Kenneth Millett; Pierre-Edouard Sottas; Andrzej Stasiak
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-29       Impact factor: 11.205

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-12

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Authors:  V Katritch; W K Olson; A Vologodskii; J Dubochet; A Stasiak
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-05

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Authors:  A Hanke; R Metzler; P G Dommersnes; Y Kantor; M Kardar
Journal:  Eur Phys J E Soft Matter       Date:  2003-10       Impact factor: 1.890

  8 in total
  9 in total

1.  Diffusion of isolated DNA molecules: dependence on length and topology.

Authors:  Rae M Robertson; Stephan Laib; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

2.  Action at hooked or twisted-hooked DNA juxtapositions rationalizes unlinking preference of type-2 topoisomerases.

Authors:  Zhirong Liu; Lynn Zechiedrich; Hue Sun Chan
Journal:  J Mol Biol       Date:  2010-05-10       Impact factor: 5.469

3.  Inferring global topology from local juxtaposition geometry: interlinking polymer rings and ramifications for topoisomerase action.

Authors:  Zhirong Liu; E Lynn Zechiedrich; Hue Sun Chan
Journal:  Biophys J       Date:  2006-04-01       Impact factor: 4.033

4.  Statistics of knots, geometry of conformations, and evolution of proteins.

Authors:  Rhonald C Lua; Alexander Y Grosberg
Journal:  PLoS Comput Biol       Date:  2006-05-19       Impact factor: 4.475

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Authors:  Julien Dorier; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2009-09-02       Impact factor: 16.971

6.  Effects of Knots on Ring Polymers in Solvents of Varying Quality.

Authors:  Arturo Narros; Angel J Moreno; Christos N Likos
Journal:  Macromolecules       Date:  2013-04-16       Impact factor: 5.985

7.  An Anisotropic Effective Model for the Simulation of Semiflexible Ring Polymers.

Authors:  Peter Poier; Christos N Likos; Angel J Moreno; Ronald Blaak
Journal:  Macromolecules       Date:  2015-07-10       Impact factor: 5.985

8.  Cluster Glasses of Semiflexible Ring Polymers.

Authors:  Mohammed Zakaria Slimani; Petra Bacova; Marco Bernabei; Arturo Narros; Christos N Likos; Angel J Moreno
Journal:  ACS Macro Lett       Date:  2014-06-12       Impact factor: 6.903

9.  Vortex knots in tangled quantum eigenfunctions.

Authors:  Alexander J Taylor; Mark R Dennis
Journal:  Nat Commun       Date:  2016-07-29       Impact factor: 14.919

  9 in total

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