Literature DB >> 12005726

Equilibrium shapes of flat knots.

Ralf Metzler1, Andreas Hanke, Paul G Dommersnes, Yacov Kantor, Mehran Kardar.   

Abstract

We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localized on a small portion of the larger ring polymer. Within this region, the original knot configuration can assume a hierarchy of contracted shapes, the dominating one given by just one small loop. This hierarchy is investigated in detail for the flat trefoil knot, and corroborated by Monte Carlo simulations.

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Year:  2002        PMID: 12005726     DOI: 10.1103/PhysRevLett.88.188101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  14 in total

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Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Topologically driven swelling of a polymer loop.

Authors:  Nathan T Moore; Rhonald C Lua; Alexander Y Grosberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-31       Impact factor: 11.205

3.  Entropy-driven genome organization.

Authors:  Davide Marenduzzo; Cristian Micheletti; Peter R Cook
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

4.  The tangled web of self-tying knots.

Authors:  Andrew Belmonte
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

5.  Free-energy calculations for semi-flexible macromolecules: applications to DNA knotting and looping.

Authors:  Stefan M Giovan; Robert G Scharein; Andreas Hanke; Stephen D Levene
Journal:  J Chem Phys       Date:  2014-11-07       Impact factor: 3.488

6.  Effects of knot tightness at the molecular level.

Authors:  Liang Zhang; Jean-François Lemonnier; Angela Acocella; Matteo Calvaresi; Francesco Zerbetto; David A Leigh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-25       Impact factor: 11.205

7.  The average shape of the closed trefoil knot fluctuating on a floppy rope.

Authors:  Marcin Modlinski; Sylwester Przybyl; Piotr Pieranski
Journal:  Eur Phys J E Soft Matter       Date:  2013-05-14       Impact factor: 1.890

8.  Tightness of knots in a polymer chain.

Authors:  Xiaozhong Zheng; Alexander Vologodskii
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-26

9.  Sequence-specific size, structure, and stability of tight protein knots.

Authors:  Joachim Dzubiella
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

10.  Tight and loose shapes in flat entangled dense polymers.

Authors:  A Hanke; R Metzler; P G Dommersnes; Y Kantor; M Kardar
Journal:  Eur Phys J E Soft Matter       Date:  2003-10       Impact factor: 1.890

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