Literature DB >> 15007670

Tight and loose shapes in flat entangled dense polymers.

A Hanke1, R Metzler2, P G Dommersnes3, Y Kantor4, M Kardar5.   

Abstract

We investigate the effects of topological constraints (entanglements) on two-dimensional polymer loops in the dense phase, and at the collapse transition (theta-point). Previous studies have shown that in the dilute phase the entangled region becomes tight, and is thus localised on a small portion of the polymer. We find that the entropic force favouring tightness is considerably weaker in dense polymers. While the simple figure-eight structure, created by a single crossing in the polymer loop, localises weakly, the trefoil knot and all other prime knots are loosely spread out over the entire chain. In both the dense and theta conditions, the uncontracted-knot configuration is the most likely shape within a scaling analysis. By contrast, a strongly localised figure-eight is the most likely shape for dilute prime knots. Our findings are compared to recent simulations.

Entities:  

Year:  2003        PMID: 15007670     DOI: 10.1140/epje/i2003-10067-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  14 in total

Review 1.  Single-molecule biomechanics with optical methods.

Authors:  A D Mehta; M Rief; J A Spudich; D A Smith; R M Simmons
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

Review 2.  Illuminating single molecules in condensed matter.

Authors:  W E Moerner; M Orrit
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

3.  Equilibrium shapes of flat knots.

Authors:  Ralf Metzler; Andreas Hanke; Paul G Dommersnes; Yacov Kantor; Mehran Kardar
Journal:  Phys Rev Lett       Date:  2002-04-19       Impact factor: 9.161

4.  Dense loops, supersymmetry, and Goldstone phases in two dimensions.

Authors:  J L Jacobsen; N Read; H Saleur
Journal:  Phys Rev Lett       Date:  2003-03-04       Impact factor: 9.161

5.  Tightness of slip-linked polymer chains.

Authors:  Ralf Metzler; Andreas Hanke; Paul G Dommersnes; Yacov Kantor; Mehran Kardar
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-06-12

6.  Topological effects of knots in polymers.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-12-12       Impact factor: 9.161

7.  Polymer network of fixed topology: Renormalization, exact critical exponent gamma in two dimensions, and D=4- epsilon.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-08-25       Impact factor: 9.161

Review 8.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

9.  Simplification of DNA topology below equilibrium values by type II topoisomerases.

Authors:  V V Rybenkov; C Ullsperger; A V Vologodskii; N R Cozzarelli
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

10.  Polymer theta-point as a knot delocalization transition.

Authors:  E Orlandini; A L Stella; C Vanderzande
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-09-19
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  1 in total

1.  Topologically driven swelling of a polymer loop.

Authors:  Nathan T Moore; Rhonald C Lua; Alexander Y Grosberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-31       Impact factor: 11.205

  1 in total

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