Literature DB >> 10692323

Cholesterol effects on the phosphatidylcholine bilayer polar region: a molecular simulation study.

M Pasenkiewicz-Gierula1, T Róg, K Kitamura, A Kusumi.   

Abstract

A molecular dynamics (MD) simulation of a fully hydrated, liquid-crystalline dimyristoylphosphatidylcholine (DMPC)-Chol bilayer membrane containing approximately 22 mol% Chol was carried out for 4.3 ns. The bilayer reached thermal equilibrium after 2.3 ns of MD simulation. A 2.0-ns trajectory generated during 2.3-4.3 ns of MD simulation was used for analyses to determine the effects of Chol on the membrane/water interfacial region. In this region, 70% of Chol molecules are linked to DMPC molecules via short-distance interactions, where the Chol hydroxyl group (OH-Chol) is 1) charge paired to methyl groups of the DMPC choline moiety ( approximately 34%), via the hydroxyl oxygen atom (Och); 2) water bridged to carbonyl ( approximately 19%) and nonester phosphate ( approximately 14%) oxygen atoms, via both Och and the hydroxyl hydrogen atom (Hch); and 3) directly hydrogen (H) bonded to carbonyl ( approximately 11%) and nonester phosphate ( approximately 5%) oxygen atoms, via Hch ( approximately 17% of DMPC-Chol links are multiple). DMPC's gamma-chain carbonyl oxygen atom is involved in 44% of water bridges and 51% of direct H bonds formed between DMPC and Chol. On average, a Chol molecule forms 0.9 links with DMPC molecules, while a DMPC molecule forms 2.2 and 0.3 links with DMPC and Chol molecules, respectively. OH-Chol makes hydrogen bonds with 1.1 water molecules, preferentially via Hch. The average number of water molecules H bonded to the DMPC headgroup is increased by 7% in the presence of Chol. These results indicate that inclusion of Chol decreases interlipid links and increases hydration in the polar region of the membrane.

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Year:  2000        PMID: 10692323      PMCID: PMC1300736          DOI: 10.1016/S0006-3495(00)76691-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

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Authors:  P L Yeagle; R B Martin
Journal:  Biochem Biophys Res Commun       Date:  1976-04-05       Impact factor: 3.575

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Journal:  Biochim Biophys Acta       Date:  1972-01-17

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Journal:  Biochemistry       Date:  1983-03-01       Impact factor: 3.162

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Authors:  E Bicknell-Brown; K G Brown
Journal:  Biochem Biophys Res Commun       Date:  1980-05-30       Impact factor: 3.575

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Authors:  P L Yeagle; W C Hutton; C Huang; R B Martin
Journal:  Biochemistry       Date:  1977-10-04       Impact factor: 3.162

6.  A carbon-13 nuclear magnetic resonance spectroscopic study of inter-proton pair order parameters: a new approach to study order and dynamics in phospholipid membrane systems.

Authors:  J A Urbina; B Moreno; W Arnold; C H Taron; P Orlean; E Oldfield
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

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Authors:  B de Kruijff
Journal:  Biochim Biophys Acta       Date:  1978-01-19

8.  Influence of cholesterol on bilayers of ester- and ether-linked phospholipids. Permeability and 13C-nuclear magnetic resonance measurements.

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Journal:  Biochim Biophys Acta       Date:  1984-05-16

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Authors:  T J McIntosh
Journal:  Biochim Biophys Acta       Date:  1978-10-19

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Authors:  D J Recktenwald; H M McConnell
Journal:  Biochemistry       Date:  1981-07-21       Impact factor: 3.162

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  62 in total

1.  Molecular dynamics simulation of the structure of dimyristoylphosphatidylcholine bilayers with cholesterol, ergosterol, and lanosterol.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

2.  Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel.

Authors:  D E Elmore; D A Dougherty
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.

Authors:  Emma Falck; Michael Patra; Mikko Karttunen; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

4.  Effect of membrane characteristics on phase separation and domain formation in cholesterol-lipid mixtures.

Authors:  Veena Pata; Nily Dan
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

5.  Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.

Authors:  Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; Mikko Karttunen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

6.  A new fluorescent squaraine probe for the measurement of membrane polarity.

Authors:  Valeriya M Ioffe; Galyna P Gorbenko; Yegor A Domanov; Anatoliy L Tatarets; Leonid D Patsenker; Ewald A Terpetsching; Tatyana S Dyubko
Journal:  J Fluoresc       Date:  2006-01-06       Impact factor: 2.217

7.  Comparative molecular dynamics study of lipid membranes containing cholesterol and ergosterol.

Authors:  Jacek Czub; Maciej Baginski
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

8.  Saturation with cholesterol increases vertical order and smoothes the surface of the phosphatidylcholine bilayer: a molecular simulation study.

Authors:  Elżbieta Plesnar; Witold K Subczynski; Marta Pasenkiewicz-Gierula
Journal:  Biochim Biophys Acta       Date:  2011-10-29

9.  Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles.

Authors:  Gary Ayton; Alexander M Smondyrev; Scott G Bardenhagen; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

10.  Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine.

Authors:  Sagar A Pandit; Eric Jakobsson; H L Scott
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

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