Literature DB >> 15302930

X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.

Mayssam H Ali1, Ezra Peisach, Karen N Allen, Barbara Imperiali.   

Abstract

The x-ray crystal structure of an oligomeric miniprotein has been determined to a 1.2-A resolution by means of multiwavelength anomalous diffraction phasing with selenomethionine analogs that retain the biophysical characteristics of the native peptide. Peptide 1, comprising alpha and beta secondary structure elements with only 21 aa per monomer, associates as a discrete tetramer. The peptide adopts a previously uncharacterized quaternary structure in which alpha and beta components interact to form a tightly packed and well defined hydrophobic core. The structure provides insight into the origins of the unusual thermal stability of the oligomer. The miniprotein shares many characteristics of larger proteins, including cooperative folding, lack of 1-anilino-8-naphthalene sulfonate binding, and limited deuterium exchange, and possesses a buried surface area typical of native proteins.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15302930      PMCID: PMC514454          DOI: 10.1073/pnas.0401245101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Discovery and characterization of a discretely folded homotrimeric betabetaalpha peptide.

Authors:  A R Mezo; J J Ottesen; B Imperiali
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

Review 2.  3D domain swapping: as domains continue to swap.

Authors:  Yanshun Liu; David Eisenberg
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

3.  The two-stranded alpha-helical coiled-coil is an ideal model for studying protein stability and subunit interactions.

Authors:  N E Zhou; B Y Zhu; C M Kay; R S Hodges
Journal:  Biopolymers       Date:  1992-04       Impact factor: 2.505

4.  Design of a 20-amino acid, three-stranded beta-sheet protein.

Authors:  T Kortemme; M Ramírez-Alvarado; L Serrano
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

Review 5.  Three-dimensional domain duplication, swapping and stealing.

Authors:  J Heringa; W R Taylor
Journal:  Curr Opin Struct Biol       Date:  1997-06       Impact factor: 6.809

6.  Surface, subunit interfaces and interior of oligomeric proteins.

Authors:  J Janin; S Miller; C Chothia
Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

7.  Modulating pyridoxamine-mediated transamination through a betabeta alpha motif peptide scaffold.

Authors:  M A Shogren-Knaak; B Imperiali
Journal:  Bioorg Med Chem       Date:  1999-09       Impact factor: 3.641

8.  Solvent-accessible surfaces of proteins and nucleic acids.

Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  The 2.0-A resolution crystal structure of a trimeric antibody fragment with noncognate VH-VL domain pairs shows a rearrangement of VH CDR3.

Authors:  X Y Pei; P Holliger; A G Murzin; R L Williams
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-02       Impact factor: 11.205

View more
  8 in total

1.  Folding and association of a homotetrameric protein complex in an all-atom Go model.

Authors:  W M Berhanu; P Jiang; U H E Hansmann
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-01-11

2.  Folding and self-assembly of a small heterotetramer.

Authors:  Fatih Yaşar; Adam K Sieradzan; Ulrich H E Hansmann
Journal:  J Chem Phys       Date:  2014-03-14       Impact factor: 3.488

3.  Folding and self-assembly of a small protein complex.

Authors:  Adam K Sieradzan; Adam Liwo; Ulrich H E Hansmann
Journal:  J Chem Theory Comput       Date:  2012-09-11       Impact factor: 6.006

Review 4.  Artificial beta-sheets: chemical models of beta-sheets.

Authors:  Omid Khakshoor; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2008-09-05       Impact factor: 8.822

5.  Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions.

Authors:  Omid Khakshoor; Borries Demeler; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

6.  Structure and function of a Campylobacter jejuni thioesterase Cj0915, a hexameric hot dog fold enzyme.

Authors:  Takeshi Yokoyama; Kyoung-Jae Choi; Anne M Bosch; Hye-Jeong Yeo
Journal:  Biochim Biophys Acta       Date:  2009-03-17

Review 7.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

8.  Revised Backbone-Virtual-Bond-Angle Potentials to Treat the l- and d-Amino Acid Residues in the Coarse-Grained United Residue (UNRES) Force Field.

Authors:  Adam K Sieradzan; Andrei Niadzvedtski; Harold A Scheraga; Adam Liwo
Journal:  J Chem Theory Comput       Date:  2014-04-15       Impact factor: 6.006

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.