Literature DB >> 9204285

Three-dimensional domain duplication, swapping and stealing.

J Heringa1, W R Taylor.   

Abstract

Examination of multidomain and/or multimeric protein structures can reveal evolutionary paths to a more complex 3D organization. Over the past few years, proteins have been shown to evolve while preserving mutual domain organization and interfaces. The recent advances in understanding domain reorganization and mobility highlight the versatility and efficiency of protein structural evolution.

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Year:  1997        PMID: 9204285     DOI: 10.1016/s0959-440x(97)80060-7

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  25 in total

1.  Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications.

Authors:  M V Katti; R Sami-Subbu; P K Ranjekar; V S Gupta
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

2.  Proteins of circularly permuted sequence present within the same organism: the major serine proteinase inhibitor from Capsicum annuum seeds.

Authors:  N Antcheva; A Pintar; A Patthy; A Simoncsits; E Barta; B Tchorbanov; S Pongor
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

Review 3.  3D domain swapping: as domains continue to swap.

Authors:  Yanshun Liu; David Eisenberg
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

4.  Rapid protein domain assignment from amino acid sequence using predicted secondary structure.

Authors:  Russell L Marsden; Liam J McGuffin; David T Jones
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

5.  Three monophyletic superfamilies account for the majority of the known glycosyltransferases.

Authors:  Jing Liu; Arcady Mushegian
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

6.  X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.

Authors:  Mayssam H Ali; Ezra Peisach; Karen N Allen; Barbara Imperiali
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

7.  Hydrophobic forces and the length limit of foldable protein domains.

Authors:  Milo M Lin; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

Review 8.  Evolution and tinkering: what do a protein kinase, a transcriptional regulator and chromosome segregation/cell division proteins have in common?

Authors:  Abderahmane Derouiche; Lei Shi; Aida Kalantari; Ivan Mijakovic
Journal:  Curr Genet       Date:  2015-08-19       Impact factor: 3.886

9.  Artificial domain duplication replicates evolutionary history of ketol-acid reductoisomerases.

Authors:  Jackson K B Cahn; Sabine Brinkmann-Chen; Andrew R Buller; Frances H Arnold
Journal:  Protein Sci       Date:  2015-12-21       Impact factor: 6.725

Review 10.  Protein reconstitution and three-dimensional domain swapping: benefits and constraints of covalency.

Authors:  Jannette Carey; Stina Lindman; Mikael Bauer; Sara Linse
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

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