Literature DB >> 15267365

Electric field-controlled water permeation coupled to ion transport through a nanopore.

J Dzubiella1, R J Allen, J-P Hansen.   

Abstract

We report molecular dynamics simulations of a generic hydrophobic nanopore connecting two reservoirs which are initially at different Na(+) concentrations, as in a biological cell. The nanopore is impermeable to water under equilibrium conditions, but the strong electric field caused by the ionic concentration gradient drives water molecules in. The density and structure of water in the pore are highly field dependent. In a typical simulation run, we observe a succession of cation passages through the pore, characterized by approximately bulk mobility. These ion passages reduce the electric field, until the pore empties of water and closes to further ion transport, thus providing a possible mechanism for biological ion channel gating. (c) 2004 American Institute of Physics.

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Year:  2004        PMID: 15267365     DOI: 10.1063/1.1665656

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  24 in total

1.  Electric-field-induced wetting and dewetting in single hydrophobic nanopores.

Authors:  Matthew R Powell; Leah Cleary; Matthew Davenport; Kenneth J Shea; Zuzanna S Siwy
Journal:  Nat Nanotechnol       Date:  2011-10-30       Impact factor: 39.213

2.  Protons may leak through pure lipid bilayers via a concerted mechanism.

Authors:  Harald L Tepper; Gregory A Voth
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

3.  Ion transport through membrane-spanning nanopores studied by molecular dynamics simulations and continuum electrostatics calculations.

Authors:  Christine Peter; Gerhard Hummer
Journal:  Biophys J       Date:  2005-07-08       Impact factor: 4.033

4.  Ion conduction through MscS as determined by electrophysiology and simulation.

Authors:  Marcos Sotomayor; Valeria Vásquez; Eduardo Perozo; Klaus Schulten
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

5.  Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.

Authors:  Andrey A Gurtovenko; Ilpo Vattulainen
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

6.  Bubbles, gating, and anesthetics in ion channels.

Authors:  Roland Roth; Dirk Gillespie; Wolfgang Nonner; Robert E Eisenberg
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

Review 7.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

8.  Computational electrophysiology: the molecular dynamics of ion channel permeation and selectivity in atomistic detail.

Authors:  Carsten Kutzner; Helmut Grubmüller; Bert L de Groot; Ulrich Zachariae
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

9.  Entropy of single-file water in (6,6) carbon nanotubes.

Authors:  Aparna Waghe; Jayendran C Rasaiah; Gerhard Hummer
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

10.  Molecular dynamics studies on the influences of a gradient electric field on the water chain in a peptide nanotube.

Authors:  Hui Li; Jianfen F Fan; Rui Li; Yi Yu; Xiliang L Yan
Journal:  J Mol Model       Date:  2014-08-01       Impact factor: 1.810

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