Literature DB >> 15247322

A GFP-based assay for rapid screening of compounds affecting ARE-dependent mRNA turnover.

Don Benjamin1, Marco Colombi, Christoph Moroni.   

Abstract

A reporter transcript containing the green fluorescent protein (GFP) gene upstream of the destabilizing 3'-untranslated region (3'-UTR) of the murine IL-3 gene was inserted in mouse PB-3c-15 mast cells. The GFP-IL-3 transcript was inherently unstable due to the presence of an adenosine-uridine (AU)-rich element (ARE) in the 3'-UTR and was subject to rapid decay giving a low baseline of GFP fluorescence. Transcript stabilization with ionomycin resulted in an increase of fluorescence that is quantitated by FACS analysis of responding cells. Using this system we have identified okadaic acid as a novel stabilizing compound, and investigated the upstream signaling pathways leading to stabilization. This reporter system has the advantage of speed and simplicity over standard methods currently in use and in addition to serving as a research tool it can be easily automated to increase throughput for drug discovery.

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Year:  2004        PMID: 15247322      PMCID: PMC443554          DOI: 10.1093/nar/gnh086

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  ARED 2.0: an update of AU-rich element mRNA database.

Authors:  Tala Bakheet; Bryan R G Williams; Khalid S A Khabar
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 2.  The control of mRNA stability in response to extracellular stimuli.

Authors:  Jaekyung Shim; Michael Karin
Journal:  Mol Cells       Date:  2002-12-31       Impact factor: 5.034

Review 3.  Post-transcriptional regulation of gene expression by mitogen-activated protein kinase p38.

Authors:  Andrew R Clark; Jonathan L E Dean; Jeremy Saklatvala
Journal:  FEBS Lett       Date:  2003-07-03       Impact factor: 4.124

4.  Comparison of enhanced green fluorescent protein and its destabilized form as transcription reporters.

Authors:  X Zhao; T Duong; C C Huang; S R Kain; X Li
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

5.  Regulation of interleukin 3 mRNA expression in mast cells occurs at the posttranscriptional level and is mediated by calcium ions.

Authors:  A Wodnar-Filipowicz; C Moroni
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

6.  Cellular mutants define a common mRNA degradation pathway targeting cytokine AU-rich elements.

Authors:  G Stoecklin; P Stoeckle; M Lu; O Muehlemann; C Moroni
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

7.  A constitutive decay element promotes tumor necrosis factor alpha mRNA degradation via an AU-rich element-independent pathway.

Authors:  Georg Stoecklin; Min Lu; Bernd Rattenbacher; Christoph Moroni
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

8.  Mast cells sensitive to v-H-ras transformation are hyperinducible for interleukin 3 expression and have lost tumor-suppressor activity.

Authors:  A P Nair; H H Hirsch; C Moroni
Journal:  Oncogene       Date:  1992-10       Impact factor: 9.867

9.  c-jun N-terminal kinase is involved in AUUUA-mediated interleukin-3 mRNA turnover in mast cells.

Authors:  X F Ming; M Kaiser; C Moroni
Journal:  EMBO J       Date:  1998-10-15       Impact factor: 11.598

10.  Suppressible and nonsuppressible autocrine mast cell tumors are distinguished by insertion of an endogenous retroviral element (IAP) into the interleukin 3 gene.

Authors:  H H Hirsch; A P Nair; C Moroni
Journal:  J Exp Med       Date:  1993-08-01       Impact factor: 14.307

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  4 in total

1.  A versatile ribosomal protein promoter-based reporter system for selective assessment of RNA stability and post-transcriptional control.

Authors:  Edward Hitti; Suhad Al-Yahya; Maher Al-Saif; Peer Mohideen; Linah Mahmoud; Stephen J Polyak; Khalid S A Khabar
Journal:  RNA       Date:  2010-04-23       Impact factor: 4.942

2.  BRF1 protein turnover and mRNA decay activity are regulated by protein kinase B at the same phosphorylation sites.

Authors:  Don Benjamin; Martin Schmidlin; Lu Min; Brigitte Gross; Christoph Moroni
Journal:  Mol Cell Biol       Date:  2006-10-09       Impact factor: 4.272

3.  AU-rich element-mediated mRNA decay can occur independently of the miRNA machinery in mouse embryonic fibroblasts and Drosophila S2-cells.

Authors:  Stephanie Helfer; Johanna Schott; Georg Stoecklin; Klaus Förstemann
Journal:  PLoS One       Date:  2012-01-13       Impact factor: 3.240

4.  RTE and CTE mRNA export elements synergistically increase expression of unstable, Rev-dependent HIV and SIV mRNAs.

Authors:  Sergey Smulevitch; Jenifer Bear; Candido Alicea; Margherita Rosati; Rashmi Jalah; Andrei S Zolotukhin; Agneta von Gegerfelt; Daniel Michalowski; Christoph Moroni; George N Pavlakis; Barbara K Felber
Journal:  Retrovirology       Date:  2006-01-13       Impact factor: 4.602

  4 in total

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