Literature DB >> 15244887

Entropy and information in neural spike trains: progress on the sampling problem.

Ilya Nemenman1, William Bialek, Rob de Ruyter van Steveninck.   

Abstract

The major problem in information theoretic analysis of neural responses and other biological data is the reliable estimation of entropy-like quantities from small samples. We apply a recently introduced Bayesian entropy estimator to synthetic data inspired by experiments, and to real experimental spike trains. The estimator performs admirably even very deep in the undersampled regime, where other techniques fail. This opens new possibilities for the information theoretic analysis of experiments, and may be of general interest as an example of learning from limited data.

Year:  2004        PMID: 15244887     DOI: 10.1103/PhysRevE.69.056111

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  64 in total

1.  Synergy, redundancy, and independence in population codes.

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Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

2.  Dynamics and processing in finite self-similar networks.

Authors:  Simon DeDeo; David C Krakauer
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3.  Auditory information coding by modeled cochlear nucleus neurons.

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4.  Neural encoding schemes of tactile information in afferent activity of the vibrissal system.

Authors:  Fernando D Farfán; Ana L Albarracín; Carmelo J Felice
Journal:  J Comput Neurosci       Date:  2012-06-22       Impact factor: 1.621

Review 5.  Temporal contingency.

Authors:  C R Gallistel; Andrew R Craig; Timothy A Shahan
Journal:  Behav Processes       Date:  2013-08-29       Impact factor: 1.777

6.  Causal entropies--a measure for determining changes in the temporal organization of neural systems.

Authors:  Jack Waddell; Rhonda Dzakpasu; Victoria Booth; Brett Riley; Jonathan Reasor; Gina Poe; Michal Zochowski
Journal:  J Neurosci Methods       Date:  2006-12-22       Impact factor: 2.390

7.  Feature extraction from spike trains with Bayesian binning: 'latency is where the signal starts'.

Authors:  Dominik Endres; Mike Oram
Journal:  J Comput Neurosci       Date:  2009-05-16       Impact factor: 1.621

Review 8.  Synergy, redundancy, and multivariate information measures: an experimentalist's perspective.

Authors:  Nicholas Timme; Wesley Alford; Benjamin Flecker; John M Beggs
Journal:  J Comput Neurosci       Date:  2013-07-03       Impact factor: 1.621

9.  Extraction and characterization of essential discharge patterns from multisite recordings of spiking ongoing activity.

Authors:  Riccardo Storchi; Gabriele E M Biella; Diego Liberati; Giuseppe Baselli
Journal:  PLoS One       Date:  2009-01-28       Impact factor: 3.240

10.  minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information.

Authors:  Patrick E Meyer; Frédéric Lafitte; Gianluca Bontempi
Journal:  BMC Bioinformatics       Date:  2008-10-29       Impact factor: 3.169

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