Literature DB >> 15224334

A caged lanthanide complex as a paramagnetic shift agent for protein NMR.

Miguel Prudêncio1, Jan Rohovec, Joop A Peters, Elitza Tocheva, Martin J Boulanger, Michael E P Murphy, Hermen-Jan Hupkes, Walter Kosters, Antonietta Impagliazzo, Marcellus Ubbink.   

Abstract

A lanthanide complex, named CLaNP (caged lanthanide NMR probe) has been developed for the characterisation of proteins by paramagnetic NMR spectroscopy. The probe consists of a lanthanide chelated by a derivative of DTPA (diethylenetriaminepentaacetic acid) with two thiol reactive functional groups. The CLaNP molecule is attached to a protein by two engineered, surface-exposed, Cys residues in a bidentate manner. This drastically limits the dynamics of the metal relative to the protein and enables measurements of pseudocontact shifts. NMR spectroscopy experiments on a diamagnetic control and the crystal structure of the probe-protein complex demonstrate that the protein structure is not affected by probe attachment. The probe is able to induce pseudocontact shifts to at least 40 A from the metal and causes residual dipolar couplings due to alignment at a high magnetic field. The molecule exists in several isomeric forms with different paramagnetic tensors; this provides a fast way to obtain long-range distance restraints.

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Year:  2004        PMID: 15224334     DOI: 10.1002/chem.200306019

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  23 in total

1.  Engineering encodable lanthanide-binding tags into loop regions of proteins.

Authors:  Katja Barthelmes; Anne M Reynolds; Ezra Peisach; Hendrik R A Jonker; Nicholas J DeNunzio; Karen N Allen; Barbara Imperiali; Harald Schwalbe
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

2.  Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

Authors:  Christian Eichmüller; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2006-12-19       Impact factor: 2.835

3.  Refinement of protein structure against non-redundant carbonyl 13C NMR relaxation.

Authors:  Nico Tjandra; Motoshi Suzuki; Shou-Lin Chang
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.835

4.  Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Authors:  Tomohide Saio; Kenji Ogura; Masashi Yokochi; Yoshihiro Kobashigawa; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

Review 5.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

6.  PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts.

Authors:  Simon P Skinner; Mois Moshev; Mathias A S Hass; Peter H J Keizers; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2013-03-23       Impact factor: 2.835

7.  How reliable are pseudocontact shifts induced in proteins and ligands by mobile paramagnetic metal tags? A modelling study.

Authors:  Dmitry Shishmarev; Gottfried Otting
Journal:  J Biomol NMR       Date:  2013-05-08       Impact factor: 2.835

8.  New molecular packing in a crystal of pseudoazurin from Alcaligenes faecalis: a double-helical arrangement of blue copper.

Authors:  Yohta Fukuda; Eiichi Mizohata; Tsuyoshi Inoue
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-02-28       Impact factor: 1.056

9.  Prospects for lanthanides in structural biology by NMR.

Authors:  Gottfried Otting
Journal:  J Biomol NMR       Date:  2008-08-08       Impact factor: 2.835

10.  Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification.

Authors:  I-Jin Lin; Bin Xia; David S King; Timothy E Machonkin; William M Westler; John L Markley
Journal:  J Am Chem Soc       Date:  2009-10-28       Impact factor: 15.419

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