Literature DB >> 15220402

National center for biotechnology information viral genomes project.

Yiming Bao1, Scott Federhen, Detlef Leipe, Vyvy Pham, Sergei Resenchuk, Mikhail Rozanov, Roman Tatusov, Tatiana Tatusova.   

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Year:  2004        PMID： 15220402      PMCID： PMC434121          DOI： 10.1128/JVI.78.14.7291-7298.2004

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


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  17 in total

1.  Complete genomes in WWW Entrez: data representation and analysis.

Authors:  T A Tatusova; I Karsch-Mizrachi; J A Ostell
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2.  Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.

Authors:  D Hiscock; C Upton
Journal:  Bioinformatics       Date:  2000-05       Impact factor: 6.937

3.  Virus taxonomy - Houston 2002.

Authors:  M A Mayo
Journal:  Arch Virol       Date:  2002-05       Impact factor: 2.574

4.  SubViral RNA: a database of the smallest known auto-replicable RNA species.

Authors:  Martin Pelchat; Lynda Rocheleau; Jonathan Perreault; Jean-Pierre Perreault
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  CDD: a curated Entrez database of conserved domain alignments.

Authors:  Aron Marchler-Bauer; John B Anderson; Carol DeWeese-Scott; Natalie D Fedorova; Lewis Y Geer; Siqian He; David I Hurwitz; John D Jackson; Aviva R Jacobs; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Thomas Madej; Gabriele H Marchler; Raja Mazumder; Anastasia N Nikolskaya; Anna R Panchenko; Bachoti S Rao; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Sona Vasudevan; Yanli Wang; Roxanne A Yamashita; Jodie J Yin; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  NCBI Reference Sequence project: update and current status.

Authors:  Kim D Pruitt; Tatiana Tatusova; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

8.  The complete DNA sequence of lymphocystis disease virus.

Authors:  C A Tidona; G Darai
Journal:  Virology       Date:  1997-04-14       Impact factor: 3.616

9.  Replication of porcine circovirus type 1 requires two proteins encoded by the viral rep gene.

Authors:  A Mankertz; B Hillenbrand
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

10.  Database resources of the National Center for Biotechnology.

Authors:  David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971
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  43 in total

1.  Gene and genome duplication in Acanthamoeba polyphaga Mimivirus.

Authors:  Karsten Suhre
Journal:  J Virol       Date:  2005-11       Impact factor: 5.103

Review 2.  Developing bioinformatic resources for coronaviruses.

Authors:  Susan C Baker; Dalia Jukneliene; Anjan Purkayastha; Eric E Snyder; Oswald R Crasta; Michael J Czar; Joao C Setubal; Bruno W Sobral
Journal:  Adv Exp Med Biol       Date:  2006       Impact factor: 2.622

3.  A morpholino oligomer targeting highly conserved internal ribosome entry site sequence is able to inhibit multiple species of picornavirus.

Authors:  Jeffrey K Stone; Rene Rijnbrand; David A Stein; Yinghong Ma; Yan Yang; Patrick L Iversen; Raul Andino
Journal:  Antimicrob Agents Chemother       Date:  2008-03-17       Impact factor: 5.191

4.  Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation.

Authors:  Corinne Rancurel; Mahvash Khosravi; A Keith Dunker; Pedro R Romero; David Karlin
Journal:  J Virol       Date:  2009-07-29       Impact factor: 5.103

5.  Bioinformatics for the Origin and Evolution of Viruses.

Authors:  Jiajia Chen; Yuxin Zhang; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

6.  ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies.

Authors:  Willy Valdivia-Granda; Francis Larson
Journal:  Database (Oxford)       Date:  2009-10-12       Impact factor: 3.451

7.  Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses.

Authors:  Rob W Briddon; Basavaprabhu L Patil; Basavaraj Bagewadi; Muhammad Shah Nawaz-ul-Rehman; Claude M Fauquet
Journal:  BMC Evol Biol       Date:  2010-04-08       Impact factor: 3.260

8.  The genomic and transcriptomic landscape of a HeLa cell line.

Authors:  Jonathan J M Landry; Paul Theodor Pyl; Tobias Rausch; Thomas Zichner; Manu M Tekkedil; Adrian M Stütz; Anna Jauch; Raeka S Aiyar; Gregoire Pau; Nicolas Delhomme; Julien Gagneur; Jan O Korbel; Wolfgang Huber; Lars M Steinmetz
Journal:  G3 (Bethesda)       Date:  2013-08-07       Impact factor: 3.154

9.  PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses.

Authors:  Yiming Bao; Vyacheslav Chetvernin; Tatiana Tatusova
Journal:  Viruses       Date:  2012-08-20       Impact factor: 5.048

10.  Functional genomics as a tool in virus research.

Authors:  Ruchi Ratra; Sunil K Lal
Journal:  Indian J Microbiol       Date:  2008-07-27       Impact factor: 2.461
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