Literature DB >> 15214701

Quantifying variability in neural responses and its application for the validation of model predictions.

Anne Hsu1, Alexander Borst, Frédéric E Theunissen.   

Abstract

A rate code assumes that a neuron's response is completely characterized by its time-varying mean firing rate. This assumption has successfully described neural responses in many systems. The noise in rate coding neurons can be quantified by the coherence function or the correlation coefficient between the neuron's deterministic time-varying mean rate and noise corrupted single spike trains. Because of the finite data size, the mean rate cannot be known exactly and must be approximated. We introduce novel unbiased estimators for the measures of coherence and correlation which are based on the extrapolation of the signal to noise ratio in the neural response to infinite data size. We then describe the application of these estimates to the validation of the class of stimulus-response models that assume that the mean firing rate captures all the information embedded in the neural response. We explain how these quantifiers can be used to separate response prediction errors that are due to inaccurate model assumptions from errors due to noise inherent in neuronal spike trains.

Mesh:

Year:  2004        PMID: 15214701

Source DB:  PubMed          Journal:  Network        ISSN: 0954-898X            Impact factor:   1.273


  37 in total

1.  Receptive field dimensionality increases from the auditory midbrain to cortex.

Authors:  Craig A Atencio; Tatyana O Sharpee; Christoph E Schreiner
Journal:  J Neurophysiol       Date:  2012-02-08       Impact factor: 2.714

2.  Neuron-specific stimulus masking reveals interference in spike timing at the cortical level.

Authors:  Eric Larson; Ross K Maddox; Ben P Perrone; Kamal Sen; Cyrus P Billimoria
Journal:  J Assoc Res Otolaryngol       Date:  2011-10-01

3.  Role of the zebra finch auditory thalamus in generating complex representations for natural sounds.

Authors:  Noopur Amin; Patrick Gill; Frédéric E Theunissen
Journal:  J Neurophysiol       Date:  2010-06-16       Impact factor: 2.714

4.  Modulation power and phase spectrum of natural sounds enhance neural encoding performed by single auditory neurons.

Authors:  Anne Hsu; Sarah M N Woolley; Thane E Fremouw; Frédéric E Theunissen
Journal:  J Neurosci       Date:  2004-10-13       Impact factor: 6.167

5.  Dejittered spike-conditioned stimulus waveforms yield improved estimates of neuronal feature selectivity and spike-timing precision of sensory interneurons.

Authors:  Zane N Aldworth; John P Miller; Tomás Gedeon; Graham I Cummins; Alexander G Dimitrov
Journal:  J Neurosci       Date:  2005-06-01       Impact factor: 6.167

6.  Sound representation methods for spectro-temporal receptive field estimation.

Authors:  Patrick Gill; Junli Zhang; Sarah M N Woolley; Thane Fremouw; Frédéric E Theunissen
Journal:  J Comput Neurosci       Date:  2006-04-22       Impact factor: 1.621

7.  Linear and nonlinear auditory response properties of interneurons in a high-order avian vocal motor nucleus during wakefulness.

Authors:  Jonathan N Raksin; Christopher M Glaze; Sarah Smith; Marc F Schmidt
Journal:  J Neurophysiol       Date:  2011-12-28       Impact factor: 2.714

8.  Multidimensional stimulus encoding in the auditory nerve of the barn owl.

Authors:  Brian J Fischer; Jacob L Wydick; Christine Köppl; José L Peña
Journal:  J Acoust Soc Am       Date:  2018-10       Impact factor: 1.840

9.  An improved estimator of Variance Explained in the presence of noise.

Authors:  Ralf M Haefner; Bruce G Cumming
Journal:  Adv Neural Inf Process Syst       Date:  2008

10.  A continuous semantic space describes the representation of thousands of object and action categories across the human brain.

Authors:  Alexander G Huth; Shinji Nishimoto; An T Vu; Jack L Gallant
Journal:  Neuron       Date:  2012-12-20       Impact factor: 17.173

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