Literature DB >> 15193316

Application of NMR and EPR methods to the study of RNA.

Peter Z Qin1, Thorsten Dieckmann.   

Abstract

The application of techniques based on magnetic resonance, specifically electron paramagnetic resonance (EPR) and nuclear magnetic resonance (NMR), has provided a wealth of new information on RNA structures, as well as insights into the dynamics and function of these important biomolecules. NMR spectroscopy is very successful for determining the solution structures of small RNA domains, aptamers and ribozymes, and exploring their intramolecular dynamics and interactions with ligands. EPR-based methods have been used to map local dynamic and structural features of RNA, to explore different modes of RNA-ligand interaction, to obtain long-range structural restraints and to probe metal-ion-binding sites.

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Year:  2004        PMID: 15193316     DOI: 10.1016/j.sbi.2004.04.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

1.  Doubly Spin-Labeled RNA as an EPR Reporter for Studying Multicomponent Supramolecular Assemblies.

Authors:  Alexey A Malygin; Dmitri M Graifer; Maria I Meschaninova; Aliya G Venyaminova; Olesya A Krumkacheva; Matvey V Fedin; Galina G Karpova; Elena G Bagryanskaya
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

2.  Cobalt-based paramagnetic probe to study RNA-protein interactions by NMR.

Authors:  Leah M Seebald; Christopher M DeMott; Srivathsan Ranganathan; Papa Nii Asare-Okai; Anastasia Glazunova; Alan Chen; Alexander Shekhtman; Maksim Royzen
Journal:  J Inorg Biochem       Date:  2017-02-24       Impact factor: 4.155

Review 3.  Site-directed spin labeling studies on nucleic acid structure and dynamics.

Authors:  Glenna Z Sowa; Peter Z Qin
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

Review 4.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

Review 5.  RNA dynamics: perspectives from spin labels.

Authors:  Phuong Nguyen; Peter Z Qin
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-08-22       Impact factor: 9.957

6.  A model system for investigating lineshape/structure correlations in RNA site-directed spin labeling.

Authors:  Peter Z Qin; Jennifer Iseri; Arisa Oki
Journal:  Biochem Biophys Res Commun       Date:  2006-03-03       Impact factor: 3.575

Review 7.  Advances in the determination of nucleic acid conformational ensembles.

Authors:  Loïc Salmon; Shan Yang; Hashim M Al-Hashimi
Journal:  Annu Rev Phys Chem       Date:  2013-12-16       Impact factor: 12.703

Review 8.  Use of electron paramagnetic resonance to solve biochemical problems.

Authors:  Indra D Sahu; Robert M McCarrick; Gary A Lorigan
Journal:  Biochemistry       Date:  2013-08-20       Impact factor: 3.162

9.  Diastereomer characterizations of nitroxide-labeled nucleic acids.

Authors:  Gian Paola G Grant; Anna Popova; Peter Z Qin
Journal:  Biochem Biophys Res Commun       Date:  2008-04-28       Impact factor: 3.575

10.  Motions of the substrate recognition duplex in a group I intron assessed by site-directed spin labeling.

Authors:  Gian Paola G Grant; Nathan Boyd; Daniel Herschlag; Peter Z Qin
Journal:  J Am Chem Soc       Date:  2009-03-11       Impact factor: 15.419

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