Literature DB >> 23961941

Use of electron paramagnetic resonance to solve biochemical problems.

Indra D Sahu1, Robert M McCarrick, Gary A Lorigan.   

Abstract

Electron paramagnetic resonance (EPR) spectroscopy is a very powerful biophysical tool that can provide valuable structural and dynamic information about a wide variety of biological systems. The intent of this review is to provide a general overview for biochemists and biological researchers of the most commonly used EPR methods and how these techniques can be used to answer important biological questions. The topics discussed could easily fill one or more textbooks; thus, we present a brief background on several important biological EPR techniques and an overview of several interesting studies that have successfully used EPR to solve pertinent biological problems. The review consists of the following sections: an introduction to EPR techniques, spin-labeling methods, and studies of naturally occurring organic radicals and EPR active transition metal systems that are presented as a series of case studies in which EPR spectroscopy has been used to greatly further our understanding of several important biological systems.

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Year:  2013        PMID: 23961941      PMCID: PMC3839053          DOI: 10.1021/bi400834a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  131 in total

1.  Proton Coupled Electron Transfer and Redox Active Tyrosines: Structure and Function of the Tyrosyl Radicals in Ribonucleotide Reductase and Photosystem II.

Authors:  Bridgette A Barry; Jun Chen; James Keough; David Jenson; Adam Offenbacher; Cynthia Pagba
Journal:  J Phys Chem Lett       Date:  2012-02-08       Impact factor: 6.475

Review 2.  A new spin on protein dynamics.

Authors:  Linda Columbus; Wayne L Hubbell
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

3.  Localization of the N-terminal domain in light-harvesting chlorophyll a/b protein by EPR measurements.

Authors:  Gunnar Jeschke; Alexander Bender; Thorsten Schweikardt; Grazyna Panek; Heinz Decker; Harald Paulsen
Journal:  J Biol Chem       Date:  2005-03-08       Impact factor: 5.157

4.  Site-directed spin labeling demonstrates that transmembrane domain XII in the lactose permease of Escherichia coli is an alpha-helix.

Authors:  J Voss; M M He; W L Hubbell; H R Kaback
Journal:  Biochemistry       Date:  1996-10-01       Impact factor: 3.162

5.  Identification of histidine at the catalytic site of the photosynthetic oxygen-evolving complex.

Authors:  X S Tang; B A Diner; B S Larsen; M L Gilchrist; G A Lorigan; R D Britt
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

Review 6.  Histidine at the catalytic site of the photosynthetic oxygen-evolving complex.

Authors:  R D Britt; X S Tang; M L Gilchrist; G A Lorigan; B S Larsen; B A Diner
Journal:  Biochem Soc Trans       Date:  1994-05       Impact factor: 5.407

7.  Spin labeling analysis of structure and dynamics of the Na(+)/proline transporter of Escherichia coli.

Authors:  C Wegener; S Tebbe; H J Steinhoff; H Jung
Journal:  Biochemistry       Date:  2000-04-25       Impact factor: 3.162

8.  Function of transmembrane domain IX in the Na+/proline transporter PutP.

Authors:  Michael Raba; Tobias Baumgartner; Daniel Hilger; Katrin Klempahn; Tobias Härtel; Kirsten Jung; Heinrich Jung
Journal:  J Mol Biol       Date:  2008-07-30       Impact factor: 5.469

9.  Structure of KCNE1 and implications for how it modulates the KCNQ1 potassium channel.

Authors:  Congbao Kang; Changlin Tian; Frank D Sönnichsen; Jarrod A Smith; Jens Meiler; Alfred L George; Carlos G Vanoye; Hak Jun Kim; Charles R Sanders
Journal:  Biochemistry       Date:  2008-07-09       Impact factor: 3.162

10.  A PELDOR-based nanometer distance ruler for oligonucleotides.

Authors:  Olav Schiemann; Nelly Piton; Yuguang Mu; Gerhard Stock; Joachim W Engels; Thomas F Prisner
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

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  31 in total

1.  Doubly Spin-Labeled RNA as an EPR Reporter for Studying Multicomponent Supramolecular Assemblies.

Authors:  Alexey A Malygin; Dmitri M Graifer; Maria I Meschaninova; Aliya G Venyaminova; Olesya A Krumkacheva; Matvey V Fedin; Galina G Karpova; Elena G Bagryanskaya
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

2.  Site Directed Spin Labeling and EPR Spectroscopic Studies of Pentameric Ligand-Gated Ion Channels.

Authors:  Sandip Basak; Soumili Chatterjee; Sudha Chakrapani
Journal:  J Vis Exp       Date:  2016-07-04       Impact factor: 1.355

3.  Determining the Secondary Structure of Membrane Proteins and Peptides Via Electron Spin Echo Envelope Modulation (ESEEM) Spectroscopy.

Authors:  Lishan Liu; Daniel J Mayo; Indra D Sahu; Andy Zhou; Rongfu Zhang; Robert M McCarrick; Gary A Lorigan
Journal:  Methods Enzymol       Date:  2015-08-01       Impact factor: 1.600

Review 4.  High-frequency and high-field electron paramagnetic resonance (HFEPR): a new spectroscopic tool for bioinorganic chemistry.

Authors:  Joshua Telser; J Krzystek; Andrew Ozarowski
Journal:  J Biol Inorg Chem       Date:  2014-01-30       Impact factor: 3.358

5.  Conformational Differences Are Observed for the Active and Inactive Forms of Pinholin S21 Using DEER Spectroscopy.

Authors:  Tanbir Ahammad; Daniel L Drew; Indra D Sahu; Rasal H Khan; Brandon J Butcher; Rachel A Serafin; Alberto P Galende; Robert M McCarrick; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2020-12-08       Impact factor: 2.991

6.  Structural Dynamics and Topology of the Inactive Form of S21 Holin in a Lipid Bilayer Using Continuous-Wave Electron Paramagnetic Resonance Spectroscopy.

Authors:  Tanbir Ahammad; Daniel L Drew; Rasal H Khan; Indra D Sahu; Emily Faul; Tianyan Li; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2020-06-19       Impact factor: 2.991

7.  Investigating the position of the hairpin loop in New Delhi metallo-β-lactamase, NDM-1, during catalysis and inhibitor binding.

Authors:  Mahesh Aitha; Abraham J Moller; Indra D Sahu; Masaki Horitani; David L Tierney; Michael W Crowder
Journal:  J Inorg Biochem       Date:  2015-10-22       Impact factor: 4.155

8.  Biophysical EPR Studies Applied to Membrane Proteins.

Authors:  Indra D Sahu; Gary A Lorigan
Journal:  J Phys Chem Biophys       Date:  2015-10-15

9.  Solid phase synthesis and spectroscopic characterization of the active and inactive forms of bacteriophage S21 pinholin protein.

Authors:  Daniel L Drew; Tanbir Ahammad; Rachel A Serafin; Brandon J Butcher; Katherine R Clowes; Zachary Drake; Indra D Sahu; Robert M McCarrick; Gary A Lorigan
Journal:  Anal Biochem       Date:  2018-12-04       Impact factor: 3.365

10.  Probing Structural Dynamics and Topology of the KCNE1 Membrane Protein in Lipid Bilayers via Site-Directed Spin Labeling and Electron Paramagnetic Resonance Spectroscopy.

Authors:  Indra D Sahu; Andrew F Craig; Megan M Dunagan; Kaylee R Troxel; Rongfu Zhang; Andrew G Meiberg; Corrinne N Harmon; Robert M McCarrick; Brett M Kroncke; Charles R Sanders; Gary A Lorigan
Journal:  Biochemistry       Date:  2015-10-07       Impact factor: 3.162

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